RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 MPIP34949 423 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 RPS19P39019 145 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 ETV5P41161 510 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 HTR2BP41595 481 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PITPNBP48739 271 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 GDI2P50395 445 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF41P51814 821 aaPredicted RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 EFNA3P52797 238 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 IST1P53990 364 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PRRX1P54821 245 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CDH15P55291 814 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CLDN6P56747 220 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 VLDLRP98155 873 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CDK6Q00534 326 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 RBBP4Q09028 425 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 STX4Q12846 297 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF155Q12901 538 aaPredicted RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 VEZF1Q14119 521 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ATP6AP1Q15904 470 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 NRF1Q16656 503 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 DUSP5Q16690 384 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF630Q2M218 657 aaPredicted RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 CD300EQ496F6 205 aaPredicted RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 TRMT12Q53H54 448 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 IGSF11Q5DX21 431 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF628Q5EBL2 1059 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 VWA2Q5GFL6 755 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF766Q5HY98 468 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 C1orf185Q5T7R7 199 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 OGFRL1Q5TC84 451 aaPredicted RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 FHL5Q5TD97 284 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 IRAK1BP1Q5VVH5 260 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 GARNL3Q5VVW2 1013 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 LAIR1Q6GTX8 287 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PWWP2BQ6NUJ5 590 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 REEP3Q6NUK4 255 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TMEM64Q6YI46 380 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 EIF3MQ7L2H7 374 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 KMT5CQ86Y97 462 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TMEM126BQ8IUX1 230 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZDHHC21Q8IVQ6 265 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF595Q8IYB9 648 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 AMER2Q8N7J2 671 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ANKFN1Q8N957 763 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 SUMF1Q8NBK3 374 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PAPD5Q8NDF8 572 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 Q8NFD4 153 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 SLC38A5Q8WUX1 472 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 METTL21AQ8WXB1 218 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 DNAJC9Q8WXX5 260 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 THRSPQ92748 146 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TANKQ92844 425 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CDS1Q92903 461 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TMBIM1Q969X1 311 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 EME1Q96AY2 570 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 MOAP1Q96BY2 351 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 RNFT2Q96EX2 444 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PERPQ96FX8 193 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PYURFQ96I23 114 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 COL21A1Q96P44 957 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 MS4A4EQ96PG1 132 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 OR6C1Q96RD1 312 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 LMF1Q96S06 567 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ZNF184Q99676 751 aaPredicted RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 NPAS1Q99742 590 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 SLC29A1Q99808 456 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CTRCQ99895 268 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CHID1Q9BWS9 393 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 UGT2B28Q9BY64 529 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ACTRT3Q9BYD9 372 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ALOXE3Q9BYJ1 711 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 AMBRA1Q9C0C7 1298 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 KLHL4Q9C0H6 718 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TMEM38AQ9H6F2 299 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 COQ10BQ9H8M1 238 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 SEC61A2Q9H9S3 476 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CXorf21Q9HAI6 301 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 C3orf14Q9HBI5 128 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 A4GALTQ9NPC4 353 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ADAP2Q9NPF8 381 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TMEM9BQ9NQ34 198 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 TRIM36Q9NQ86 728 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 C8orf4Q9NR00 106 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PCDHB16Q9NRJ7 776 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 PNO1Q9NRX1 252 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 AGPAT4Q9NRZ5 378 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 OLAHQ9NV23 265 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ARMC1Q9NVT9 282 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 VNN3Q9NY84 501 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 CTSFQ9UBX1 484 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 RARRES3Q9UL19 164 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 ABCG2Q9UNQ0 655 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 SAMD4AQ9UPU9 718 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 MRPS33Q9Y291 106 aaKnown RBP3.82□□□□□ -1.8
CD44-226ENST00000527889 CLDN16Q9Y5I7 305 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 MGAQ8IWI9 3026 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 POLEQ07864 2286 aa3.82□□□□□ -1.8
CD44-226ENST00000527889 NBASA2RRP1 2371 aa3.81□□□□□ -1.8
CD44-226ENST00000527889 DIDO1Q9BTC0 2240 aaKnown RBP3.81□□□□□ -1.8
CD44-226ENST00000527889 CCDC187A0A096LP49 1063 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms