RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RAB14P61106 215 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 SP3Q02447 781 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 EXOSC7Q15024 291 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 CCL15Q16663 113 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 SFT2D3Q587I9 215 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 CT45A2Q5DJT8 189 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 DOK6Q6PKX4 331 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 RBMS3Q6XE24 437 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 ZNF841Q6ZN19 808 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 GOLGA7Q7Z5G4 137 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 CPEB2Q7Z5Q1 589 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 TRPT1Q86TN4 253 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 MFSD6LQ8IWD5 586 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 DCUN1D3Q8IWE4 304 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 RCOR2Q8IZ40 523 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 C9orf106Q8NAJ2 232 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 CHDHQ8NE62 594 aaPredicted RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 FBXO36Q8NEA4 188 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 OR4D6Q8NGJ1 314 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 OR4D5Q8NGN0 318 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 OR13C3Q8NGS6 347 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 OR4L1Q8NH43 312 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 CCDC26Q8TAB7 109 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 HCAR2Q8TDS4 363 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 HPSE2Q8WWQ2 592 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 TM9SF4Q92544 642 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 GTF2H4Q92759 462 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 CCDC127Q96BQ5 260 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 SLC25A36Q96CQ1 311 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 C10orf35Q96D05 121 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 PELI1Q96FA3 418 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 C4orf45Q96LM5 186 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 DEFB118Q96PH6 123 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 COPS8Q99627 209 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 FUNDC2Q9BWH2 189 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 MMP28Q9H239 520 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 KAT8Q9H7Z6 458 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 LPAR2Q9HBW0 351 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 RAVER2Q9HCJ3 691 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 ADAP2Q9NPF8 381 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 POLE4Q9NR33 117 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 LYARQ9NX58 379 aaKnown RBP4.11□□□□□ -1.75
CD44-220ENST00000525688 SLC7A8Q9UHI5 535 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 PHIPQ8WWQ0 1821 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 ROBO3Q96MS0 1386 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 NAV1Q8NEY1 1877 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 MYH1P12882 1939 aa4.11□□□□□ -1.75
CD44-220ENST00000525688 A0A0D9SFI3 127 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ANTXRLA6NF34 631 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ZNF99A8MXY4 864 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 GOLGA8KD6RF30 607 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 E9PQ18 207 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 CCL24O00175 119 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 BMPR1BO00238 502 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PDHXO00330 501 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 HAT1O14929 419 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TPST2O60704 377 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 LRCH4O75427 683 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 GRAP2O75791 330 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 BRI3O95415 125 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TXNDC12O95881 172 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 HPRP00739 348 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PIGRP01833 764 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ATP1B2P14415 290 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 PPP2R1BP30154 601 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 SRD5A2P31213 254 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DUTP33316 252 aaKnown RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 CDKN2CP42773 168 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PLA2G16P53816 162 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 BACE1P56817 501 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 NAAAQ02083 359 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 STX5Q13190 355 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PEX6Q13608 980 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 SPHARQ15513 63 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 UAP1Q16222 522 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 MRPL23Q16540 153 aaKnown RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 SGCAQ16586 387 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 MOGQ16653 247 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 CDKN3Q16667 212 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ZNF718Q3SXZ3 478 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 GGTA1PQ4G0N0 100 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ARMCX4Q5H9R4 360 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 SLC35E4Q6ICL7 350 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 SLC8B1Q6J4K2 584 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TTC33Q6PID6 262 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 VITQ6UXI7 678 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PLEKHG7Q6ZR37 379 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DHDDSQ86SQ9 333 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PRUNE1Q86TP1 453 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 KCNMB4Q86W47 210 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 KIRREL3Q8IZU9 778 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 ZNF444Q8N0Y2 327 aaPredicted RBP4.1□□□□□ -1.75
CD44-220ENST00000525688 ZNF843Q8N446 348 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 SPEM1Q8N4L4 309 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 STPG4Q8N801 248 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TMEM37Q8WXS4 190 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 SMPDL3AQ92484 453 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 PIK3R3Q92569 461 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 TMEM143Q96AN5 459 aa4.1□□□□□ -1.75
CD44-220ENST00000525688 DYNLL2Q96FJ2 89 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms