RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 IL22RA1Q8N6P7 574 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 ZNF775Q96BV0 537 aaPredicted RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 OR2M2Q96R28 347 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 HDAC8Q9BY41 377 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 ZMAT3Q9HA38 289 aaKnown RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 ASF1BQ9NVP2 202 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 PLEK2Q9NYT0 353 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 CD207Q9UJ71 328 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SLC6A5Q9Y345 797 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 UBE2J1Q9Y385 318 aaPredicted RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 NOX1Q9Y5S8 564 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SERINC4A6NH21 518 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SYNGR4O95473 234 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 IL13RA1P78552 427 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 MRPS10P82664 201 aaKnown RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 CDKN3Q16667 212 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 GPR139Q6DWJ6 353 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 COX15Q7KZN9 410 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 OR51T1Q8NGJ9 327 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 PFN4Q8NHR9 129 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 NAA11Q9BSU3 229 aaPredicted RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 ZNF160Q9HCG1 818 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 ZAR1LA6NP61 321 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SRPX2O60687 465 aaPredicted RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 RAB38P57729 211 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 YBX1P67809 324 aaKnown RBP11.75□□□□□ -0.53
USP53-209ENST00000514665 TMEM244Q5VVB8 128 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 RTL10Q7L3V2 364 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SIAH3Q8IW03 269 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 MSRB3Q8IXL7 192 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 OR14L1PQ8NHC6 308 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 DCUN1D4Q92564 292 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 CDC6Q99741 560 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 MRI1Q9BV20 369 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 SGPP1Q9BX95 441 aa11.75□□□□□ -0.53
USP53-209ENST00000514665 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 A6NLC8 198 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 MAGEB4O15481 346 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 SERPINA5P05154 406 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ADH6P28332 368 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PKLRP30613 574 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 CAPZA1P52907 286 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 METAP1P53582 386 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ZMAT1Q5H9K5 638 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ASTLQ6HA08 431 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 PRSS45Q7RTY3 260 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 C12orf45Q8N5I9 185 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 RASD2Q96D21 266 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 SNX18Q96RF0 628 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 OR10A5Q9H207 317 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PLCXD1Q9NUJ7 323 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 WSB2Q9NYS7 404 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 NCDNQ9UBB6 729 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 KCNS2Q9ULS6 477 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 B3GALT1Q9Y5Z6 326 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PEX14O75381 377 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 CRYZL1O95825 349 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 P04436 131 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 NPR2P20594 1047 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 RBMS1P29558 406 aaKnown RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 DLSTP36957 453 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 CSNK1EP49674 416 aaKnown RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 SAXO2Q658L1 398 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ALKAL2Q6UX46 152 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 BTLAQ7Z6A9 289 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PXKQ7Z7A4 578 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 SYT9Q86SS6 491 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 BPIFB2Q8N4F0 458 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 FAM26EQ8N5C1 309 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PHOSPHO2Q8TCD6 241 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 SLC7A6Q92536 515 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 EID2BQ96D98 161 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 CDCA3Q99618 268 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 C7orf50Q9BRJ6 194 aaKnown RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 MKRN2Q9H000 416 aaKnown RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 CUTCQ9NTM9 273 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ZNF593O00488 134 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 DVL2O14641 736 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PRICKLE3O43900 615 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 TCRBP04435 133 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 CHRM4P08173 479 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 PSPHP78330 225 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ACY1Q03154 408 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 TDGQ13569 410 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 MED25Q71SY5 747 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 LACC1Q8IV20 430 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ZNF595Q8IYB9 648 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 OR13C9Q8NGT0 318 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 SLC37A2Q8TED4 501 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 SLC35A4Q96G79 324 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 ASB16Q96NS5 453 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 TEAD3Q99594 435 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 SIRT5Q9NXA8 310 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 REV1Q9UBZ9 1251 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 TMEFF2Q9UIK5 374 aaPredicted RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 POLHQ9Y253 713 aa11.74□□□□□ -0.53
USP53-209ENST00000514665 LSM5Q9Y4Y9 91 aaKnown RBP11.74□□□□□ -0.53
USP53-209ENST00000514665 CIB4A0PJX0 185 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 RAB40ALP0C0E4 278 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 MAOAP21397 527 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms