RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 OVCH1Q7RTY7 1134 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CPXM2Q8N436 756 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC22A24Q8N4F4 322 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 HSD17B11Q8NBQ5 300 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 PSMF1Q92530 271 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 BPIFA2Q96DR5 249 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC25A18Q9H1K4 315 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 ZNF768Q9H5H4 540 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 PARD6AQ9NPB6 346 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 SUSD2Q9UGT4 822 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 STEAP1Q9UHE8 339 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 KCTD3Q9Y597 815 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 NPIPA5A0A0B4J1W7 369 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 TRAPPC2LH3BP13 241 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 FOXE1O00358 373 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 AQP8O94778 261 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 AKR1C1Q04828 323 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OR6K3Q8NGY3 331 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 FAM71F1Q96KD3 344 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OR1F2PQ96R84 312 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 DPH1Q9BZG8 443 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 OR52A1Q9UKL2 312 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 RNF24Q9Y225 148 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 CSNK1G3Q9Y6M4 447 aa10.5□□□□□ -0.73
LIMCH1-217ENST00000512946 A0A1B0GUH1 482 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 OR5H14A6NHG9 310 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ADAMTS4O75173 837 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 CST2P09228 141 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 OR13C7P0DN81 318 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 DUSP1P28562 367 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 CD80P33681 288 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 AADACL3Q5VUY0 350 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 RBMXL3Q8N7X1 1067 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 OR13D1Q8NGV5 346 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 NOX4Q9NPH5 578 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 CDC42BPAQ5VT25 1732 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 MCRIP1C9JLW8 97 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 H3BQ06 376 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 PTHP01270 115 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 VEGFAP15692 232 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 TNFSF4P23510 183 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 LMO2P25791 158 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SUB1P53999 127 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 TBPL1P62380 186 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 COMMD6Q7Z4G1 85 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 PGBD5Q8N414 524 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 HLA-CQ95604 372 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SEC22AQ96IW7 307 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 PCYT2Q99447 389 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 NTMT1Q9BV86 223 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 PBX4Q9BYU1 374 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 MRPL22Q9NWU5 206 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 HSBP1O75506 76 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 FBXO45P0C2W1 286 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 NME1P15531 152 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 HOXA11P31270 313 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 HMGCLP35914 325 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 UBE2G1P62253 170 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 GRINAQ7Z429 371 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM130Q8N3G9 435 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 CLEC1AQ8NC01 280 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 UTP4Q969X6 686 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ISL2Q96A47 359 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 DDOQ99489 341 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ALOXE3Q9BYJ1 711 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SRRQ9GZT4 340 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 PLEKHF2Q9H8W4 249 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 B4GALT6Q9UBX8 382 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 FAM198AQ9UFP1 575 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 GPR45Q9Y5Y3 372 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 LOC100289279A0A1B0GTE1 492 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ANTXRLA6NF34 631 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SIGLEC6O43699 453 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC16A7O60669 478 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 MTHFD2P13995 350 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 TAL1P17542 331 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SERPINA2P20848 420 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ARNTP27540 789 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 PTGER4P35408 488 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 SLC22A6Q4U2R8 563 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 TREML2Q5T2D2 321 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ZBTB37Q5TC79 503 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 OR13C9Q8NGT0 318 aa10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 FUBP1Q96AE4 644 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 INTS12Q96CB8 462 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 ACTR3CQ9C0K3 210 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM129A0AVI4 362 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 OR6C76A6NM76 312 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 LY86O95711 162 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 PSMB6P28072 239 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 ARRB1P49407 418 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 SNRPGP62308 76 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 FKBP1BP68106 108 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 PIN1Q13526 163 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 AGBL4Q5VU57 503 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 SHEQ5VZ18 495 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 RPS27LQ71UM5 84 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 NAXDQ8IW45 347 aa10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 TMEM102Q8N9M5 508 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-217ENST00000512946 ABHD4Q8TB40 342 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms