RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 COMTD1Q86VU5 262 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 ZNF677Q86XU0 584 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 CBWD2Q8IUF1 395 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 CCDC65Q8IXS2 484 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 LINC00469Q8N7U9 141 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 SPATA4Q8NEY3 305 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 OR13F1Q8NGS4 319 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 TSEN15Q8WW01 171 aaKnown RBP3.87□□□□□ -1.79
SF3B1-212ENST00000496458 LZICQ8WZA0 190 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 PHYHIPQ92561 330 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 PPP1R14BQ96C90 147 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 RAB39BQ96DA2 213 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 C9orf85Q96MD7 179 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 VPS35Q96QK1 796 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 CPXM1Q96SM3 734 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 NPAS2Q99743 824 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 AUNIPQ9H7T9 357 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 AGPAT3Q9NRZ7 376 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 ONECUT1Q9UBC0 465 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 P2RX2Q9UBL9 471 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 ANKRD36BQ8N2N9 1353 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 RPAP1Q9BWH6 1393 aaPredicted RBP3.87□□□□□ -1.79
SF3B1-212ENST00000496458 MON2Q7Z3U7 1717 aa3.87□□□□□ -1.79
SF3B1-212ENST00000496458 EDC4Q6P2E9 1401 aaKnown RBP3.87□□□□□ -1.79
SF3B1-212ENST00000496458 RGPD5Q99666 1765 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 BCL9LQ86UU0 1499 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 RNF222A6NCQ9 220 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 G3V3Y1 287 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 K7ERQ8 282 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ARPC3O15145 178 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 RANBP6O60518 1105 aaKnown RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 FGFR1OPO95684 399 aaKnown RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 CSTAP01040 98 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 CHRNA1P02708 482 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ALPIP09923 528 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 PNMA6AP0CW24 399 aaPredicted RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 PNMTP11086 282 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 XCR1P46094 333 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 CRYBB1P53674 252 aaPredicted RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 NAPAP54920 295 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ZNF85Q03923 595 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ZSWIM7Q19AV6 140 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 SLC22A10Q63ZE4 541 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 HIST2H2AA3Q6FI13 130 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 PYHIN1Q6K0P9 492 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ZSCAN25Q6NSZ9 544 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 KDM7AQ6ZMT4 941 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 Q6ZPB1 254 aaPredicted RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 C16orf62Q7Z3J2 963 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 CCDC50Q8IVM0 306 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 VSTM4Q8IW00 320 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 KATNAL2Q8IYT4 538 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ZNF683Q8IZ20 524 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 OFCC1Q8IZS5 231 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 CSGALNACT2Q8N6G5 542 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 OR2L5Q8NG80 312 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 OR8K1Q8NGG5 319 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 OR5D13Q8NGL4 314 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 RFESDQ8TAC1 157 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 TFB1MQ8WVM0 346 aaKnown RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 EFHD2Q96C19 240 aaPredicted RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 HAVCR1Q96D42 359 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ZBED3Q96IU2 234 aaPredicted RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 C8orf76Q96K31 380 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 C7orf34Q96L11 122 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 BPIFA3Q9BQP9 254 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 WRAP53Q9BUR4 548 aaKnown RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 PARVGQ9HBI0 331 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 BCAP29Q9UHQ4 241 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 NTNG1Q9Y2I2 539 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 IFT52Q9Y366 437 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 PIK3C2AO00443 1686 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 ABCA3Q99758 1704 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 MAP3K5Q99683 1374 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 MAP2P11137 1827 aaKnown RBP3.86□□□□□ -1.79
SF3B1-212ENST00000496458 NSD3Q9BZ95 1437 aa3.86□□□□□ -1.79
SF3B1-212ENST00000496458 PHRF1Q9P1Y6 1649 aaKnown RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 PLCH1Q4KWH8 1693 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CRYBG1Q9Y4K1 1723 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 COL14A1Q05707 1796 aaKnown RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 SUPT3HB4E1H0 165 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 E9PMD0 336 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 SGK494L7N484 410 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 FOXE1O00358 373 aaPredicted RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 LIN7AO14910 233 aaPredicted RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 TM7SF2O76062 418 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ERLIN2O94905 339 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 SLC2A10O95528 541 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 GNA14O95837 355 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CT45A10P0DMU9 189 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 DBTP11182 482 aaKnown RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 IDO1P14902 403 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 PRKACAP17612 351 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ANXA13P27216 316 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ATP5C1P36542 298 aaKnown RBP3.85□□□□□ -1.79
SF3B1-212ENST00000496458 P2RY4P51582 365 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 FGL1Q08830 312 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 NME3Q13232 169 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 CUL1Q13616 776 aa3.85□□□□□ -1.79
SF3B1-212ENST00000496458 ZNF658Q5TYW1 1059 aaPredicted RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms