RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 METTL21EPA6NDL7 271 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 PRRG1O14668 218 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 RGS16O15492 202 aaPredicted RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 MBTPS2O43462 519 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 STAMBPO95630 424 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 IGHG4P01861 327 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 KLK3P07288 261 aaPredicted RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 ICAM2P13598 275 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 RCC1P18754 421 aaPredicted RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 HMGB2P26583 209 aaKnown RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 GLP1RP43220 463 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 ARRB1P49407 418 aaPredicted RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 GPM6AP51674 278 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 SH3BGRP55822 239 aaPredicted RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 RPS14P62263 151 aaKnown RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 MAP2K1Q02750 393 aaPredicted RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 ASPHQ12797 758 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 UNC119Q13432 240 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 C1orf61Q13536 156 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 DPYSL2Q16555 572 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 PARP15Q460N3 678 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 HSDL2Q6YN16 418 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 RDH10Q8IZV5 341 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 TMEM123Q8N131 208 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 OR2L13Q8N349 312 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 TEX9Q8N6V9 391 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 OR6C4Q8NGE1 309 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 FANK1Q8TC84 345 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 NAT9Q9BTE0 207 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 CHRDL1Q9BU40 450 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 ROGDIQ9GZN7 287 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 C20orf85Q9H1P6 137 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 REEP4Q9H6H4 257 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 EPS15L1Q9UBC2 864 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 NUFIP1Q9UHK0 495 aaKnown RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 MRPS7Q9Y2R9 242 aaKnown RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 MEMO1Q9Y316 297 aa2.18□□□□□ -2.06
VPS50-219ENST00000495039 DDX49Q9Y6V7 483 aaKnown RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 ZNFX1Q9P2E3 1918 aaKnown RBP2.18□□□□□ -2.06
VPS50-219ENST00000495039 IGLV3-16A0A075B6K0 115 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 KIR2DL5BA0A0G2JN68 375 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 KIR2DL5BA0A0G2JPC4 375 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 NKX2-6A6NCS4 301 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 FAM166BA8MTA8 275 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 E9PBE3 544 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 AGPAT2O15120 278 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 ARPC3O15145 178 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 MAGEB3O15480 346 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 POLR2DO15514 142 aaKnown RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 SCGNO76038 276 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 MMP1P03956 469 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 IQCF3P0C7M6 154 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 CHTF8P0CG12 524 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 POU2F1P14859 743 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 RPL13AP40429 203 aaKnown RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 MAP3K8P41279 467 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 VDAC2P45880 294 aaPredicted RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 DLX1P56177 255 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 ZNF763Q0D2J5 394 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 GRB7Q14451 532 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 SLC15A2Q16348 729 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 MICBQ29980 383 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 BCL7AQ4VC05 210 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 BOLA3Q53S33 107 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 MARCH8Q5T0T0 291 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 Q6ZN92 141 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 RFLNAQ6ZTI6 216 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 ZNF429Q86V71 674 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 SLC26A11Q86WA9 606 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 RALGPS2Q86X27 583 aaPredicted RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 MFSD6LQ8IWD5 586 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 KIR2DL5AQ8N109 375 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 OR9G1Q8NH87 305 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 SRSF12Q8WXF0 261 aaKnown RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 NDRG1Q92597 394 aaKnown RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 IL22RA2Q969J5 263 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 CMTM7Q96FZ5 175 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 TSGA13Q96PP4 275 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 OR11A1Q9GZK7 315 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 LRRN3Q9H3W5 708 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 RBKSQ9H477 322 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 NHEJ1Q9H9Q4 299 aaPredicted RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 RAB18Q9NP72 206 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 UFSP2Q9NUQ7 469 aa2.17□□□□□ -2.06
VPS50-219ENST00000495039 SMPD3Q9NY59 655 aaPredicted RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 RPL36Q9Y3U8 105 aaKnown RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 RPAP1Q9BWH6 1393 aaPredicted RBP2.17□□□□□ -2.06
VPS50-219ENST00000495039 LOC110117498-PIK3R3F6TDL0 507 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 TNFSF13O75888 250 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 ATP5LO75964 103 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 RHOBTB1O94844 696 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 OPN1MWP04001 364 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 OPN1MW2P0DN77 364 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 OPN1MW3P0DN78 364 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 ABOP16442 354 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 GNA11P29992 359 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 FMO3P31513 532 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 LHX2P50458 406 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 OXA1LQ15070 435 aa2.16□□□□□ -2.06
VPS50-219ENST00000495039 ATP6AP1Q15904 470 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms