RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 FOXD3Q9UJU5 478 aaPredicted RBP7.41□□□□□ -1.22
SF3A1-208ENST00000485618 TMCC3Q9ULS5 477 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 SLC7A7Q9UM01 511 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 RASD1Q9Y272 281 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 B3GALT5Q9Y2C3 310 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 FAM215AQ9Y5M1 114 aa7.41□□□□□ -1.22
SF3A1-208ENST00000485618 NCKAP5O14513 1909 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 MED12Q93074 2177 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 A0A1W2PNR3 127 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 A0A1W2PRQ8 180 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 OR6C65A6NJZ3 312 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 LIPT2A6NK58 231 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZNF724A8MTY0 619 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 TMEM229AB2RXF0 380 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZNHIT1O43257 154 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 AKAP8O43823 692 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 CYTIPO60759 359 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZG16O60844 167 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ADAM11O75078 769 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 CLDN14O95500 239 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 IGF2P01344 180 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 H1F0P07305 194 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 RAP2AP10114 183 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 PRF1P14222 555 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 NQO1P15559 274 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 HTR2AP28223 471 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 RRM2P31350 389 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 MSX2P35548 267 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 CRYBA2P53672 197 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 PLAURQ03405 335 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 PMS2P3Q13401 168 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 PIN1Q13526 163 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 C1DQ13901 141 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 DGCR6Q14129 220 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 GK3PQ14409 553 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 OR7A5Q15622 319 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZNF239Q16600 458 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 CTU2Q2VPK5 515 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ANKDD1AQ495B1 522 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 OTUD3Q5T2D3 398 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 C1orf146Q5VVC0 180 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 RTL6Q6ICC9 239 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 CYP2R1Q6VVX0 501 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZNF730Q6ZMV8 503 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 H1FNTQ75WM6 255 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 FAM214BQ7L5A3 538 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 GDF7Q7Z4P5 450 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 YTHDF3Q7Z739 585 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 GALNT5Q7Z7M9 940 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 SPATA24Q86W54 205 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 KIF18BQ86Y91 864 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 RBM45Q8IUH3 476 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 OFCC1Q8IZS5 231 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 OR6K3Q8NGY3 331 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 TMEM239Q8WW34 195 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ACOT11Q8WXI4 607 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 INTS12Q96CB8 462 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 SLC25A36Q96CQ1 311 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 SLC7A6OSQ96CW6 309 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZNF845Q96IR2 970 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 RSRC1Q96IZ7 334 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 ZNF300Q96RE9 604 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 USB1Q9BQ65 265 aaKnown RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 AMBRA1Q9C0C7 1298 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 OR11A1Q9GZK7 315 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 NANSQ9NR45 359 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 PACSIN3Q9UKS6 424 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 RNF6Q9Y252 685 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 TMEM5Q9Y2B1 443 aa7.4□□□□□ -1.22
SF3A1-208ENST00000485618 KLF2Q9Y5W3 355 aaPredicted RBP7.4□□□□□ -1.22
SF3A1-208ENST00000485618 CACNA1DQ01668 2161 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 PHF3Q92576 2039 aaKnown RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 A0A0G2JNJ9 132 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 A0A1W2PNV4 684 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 PRSS44E7EML9 344 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 H0YC42 278 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 GNGT2O14610 69 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 MSTNO14793 375 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 TPST2O60704 377 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 SS18L1O75177 396 aaPredicted RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 NPIPB7O75200 414 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 MRPL33O75394 65 aaKnown RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 TGM6O95932 706 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 MT-ND1P03886 318 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 ZNF43P17038 809 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 BMP5P22003 454 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 RPS5P46782 204 aaKnown RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 ARHGDIAP52565 204 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 TPD52P55327 224 aaPredicted RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 IL1RL1Q01638 556 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 PGM2L1Q6PCE3 622 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 LINC00114Q6XXX2 140 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 PIWIL3Q7Z3Z3 882 aaKnown RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 HDDC2Q7Z4H3 204 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 ABHD12BQ7Z5M8 362 aaPredicted RBP7.39□□□□□ -1.23
SF3A1-208ENST00000485618 GPAT4Q86UL3 456 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 ZDHHC21Q8IVQ6 265 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 ZNF100Q8IYN0 542 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 C9orf106Q8NAJ2 232 aa7.39□□□□□ -1.23
SF3A1-208ENST00000485618 RNF128Q8TEB7 428 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms