RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 OR52H1Q8NGJ2 320 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 OR8J1Q8NGP2 316 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 MAGEE2Q8TD90 523 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 RNF138Q8WVD3 245 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 STARD4Q96DR4 205 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 TIMD4Q96H15 378 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 SEC22AQ96IW7 307 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 RPRD1AQ96P16 312 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 MTMR9Q96QG7 549 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 RNF2Q99496 336 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 ZBTB18Q99592 522 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 HES7Q9BYE0 225 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 REEP4Q9H6H4 257 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 SUDS3Q9H7L9 328 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 YY1AP1Q9H869 796 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 FOLH1BQ9HBA9 442 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 TREM2Q9NZC2 230 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 KIF25Q9UIL4 384 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 NAP1L2Q9ULW6 460 aaPredicted RBP1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 STAP1Q9ULZ2 295 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 COPS3Q9UNS2 423 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 PLEKHH1Q9ULM0 1364 aa1.97□□□□□ -2.09
CCDC88A-212ENST00000474059 LRRK1Q38SD2 2015 aa1.96□□□□□ -2.09
CCDC88A-212ENST00000474059 SH3TC1Q8TE82 1336 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 ARHGAP23Q9P227 1491 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 TCRBV9S1A1TA0A576 114 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 HELTA6NFD8 242 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 SNTNA6NMZ2 147 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 GFYI3L273 518 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 EMC8O43402 210 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 MBTPS2O43462 519 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 DFNA5O60443 496 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 UGT1A9O60656 530 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF780AO75290 641 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 SUPT7LO94864 414 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 RPS2P15880 293 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 FUT3P21217 361 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 RDXP35241 583 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 RFC4P35249 363 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 UGT1A5P35504 534 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 CEBPDP49716 269 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 KLK7P49862 253 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 ATP1B3P54709 279 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 MECOMQ03112 1051 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 TGFBR3Q03167 851 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 ORC2Q13416 577 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 OXA1LQ15070 435 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 DUSP7Q16829 419 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 BCL7AQ4VC05 210 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 CARD16Q5EG05 197 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 C1orf146Q5VVC0 180 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 C11orf71Q6IPW1 123 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 GDPD3Q7L5L3 318 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 TRIM69Q86WT6 500 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 H1FOOQ8IZA3 346 aaPredicted RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 C6orf223Q8N319 242 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 CCDC71LQ8N9Z2 235 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF740Q8NDX6 193 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 BRSK1Q8TDC3 778 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 C10orf35Q96D05 121 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 PAGE5Q96GU1 130 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 OXGR1Q96P68 337 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 CLCC1Q96S66 551 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 NPY6RQ99463 290 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 COPS8Q99627 209 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 CTRCQ99895 268 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 SCRT1Q9BWW7 348 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 SELENOIQ9C0D9 397 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 POLR2J2Q9GZM3 115 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 POLR2J3Q9H1A7 115 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 RBKSQ9H477 322 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 FN3KRPQ9HA64 309 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 MCCC2Q9HCC0 563 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 SH2D2AQ9NP31 389 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 AIG1Q9NVV5 245 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 THUMPD1Q9NXG2 353 aaKnown RBP1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 HOXC10Q9NYD6 342 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 BTNL2Q9UIR0 455 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 KLK12Q9UKR0 248 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 ASB3Q9Y575 518 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 V9GY05 133 aa1.96□□□□□ -2.1
CCDC88A-212ENST00000474059 IGHV3OR16-13A0A075B7E8 117 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 IGHV1OR21-1A0A087WYE8 117 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 IQANK1A0A1B0GTG1 560 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 A6NIZ1 184 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 PCP4L1A6NKN8 68 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 USP27XA6NNY8 438 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 A8MXQ7 604 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 HIP1O00291 1037 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 FOXE1O00358 373 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 MPHOSPH10O00566 681 aaKnown RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 ABCD4O14678 606 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 HSD17B6O14756 317 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 MED7O43513 233 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 TIMM8AO60220 97 aaPredicted RBP1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 FCMRO60667 390 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 B4GALT2O60909 372 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 CA11O75493 328 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 HPNP05981 417 aa1.95□□□□□ -2.1
CCDC88A-212ENST00000474059 COX7A1P24310 79 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms