RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RAD52P43351 418 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 DEFA5Q01523 94 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 OPCMLQ14982 345 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 VN1R4Q7Z5H5 301 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ARIH2OSQ8N7S6 290 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 BOLLQ8N9W6 283 aaKnown RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 Q96M85 177 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 TEX101Q9BY14 249 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 B3GNT4Q9C0J1 378 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 NRIP3Q9NQ35 241 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 COMMD9Q9P000 198 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZNF346Q9UL40 294 aaKnown RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 CAMK2AQ9UQM7 478 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 SIGLEC7Q9Y286 467 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 NPFFR2Q9Y5X5 522 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 E9PQ18 207 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZNF593O00488 134 aaPredicted RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 CTSVO60911 334 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 IGHA1P01876 353 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 LIPCP11150 499 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 MAP3K8P41279 467 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 KIAA1024LP59773 190 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 BTN1A1Q13410 526 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 FGL2Q14314 439 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 GPR18Q14330 331 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 CLPPQ16740 277 aaPredicted RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 METTL11BQ5VVY1 283 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 LIN54Q6MZP7 749 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZAR1Q86SH2 424 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 NR2C2APQ86WQ0 139 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ETFBKMTQ8IXQ9 262 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZNF687Q8N1G0 1237 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 OR5AK2Q8NH90 309 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 MMABQ96EY8 250 aaPredicted RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 SPACA7Q96KW9 195 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 C1QTNF6Q9BXI9 259 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZNF436Q9C0F3 470 aaPredicted RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 MED11Q9P086 117 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 NCDNQ9UBB6 729 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 B3GALNT1O75752 331 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ECDO95905 644 aaPredicted RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 CA3P07451 260 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 OR2T7P0C7T2 308 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 EMDP50402 254 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 ZIC1Q15915 447 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 COL28A1Q2UY09 1125 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 C3P1Q6ZMU1 363 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 PAQR7Q86WK9 346 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 PRR22Q8IZ63 422 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 JAGN1Q8N5M9 183 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 OR2T27Q8NH04 317 aa10.94□□□□□ -0.66
MSH6-204ENST00000445503 C19orf53Q9UNZ5 99 aaPredicted RBP10.94□□□□□ -0.66
MSH6-204ENST00000445503 A0A1B0GW55 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 C2orf74A8MZ97 194 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 MCIDASD6RGH6 385 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 SPDEFO95238 335 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 THY1P04216 161 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ATP1B1P05026 303 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4L2P0CJ85 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4L3P0CJ86 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4L4P0CJ87 422 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4L5P0CJ88 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4L6P0CJ89 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4L7P0CJ90 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 GPR143P51810 404 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 SMUG1Q53HV7 270 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 MRM1Q6IN84 353 aaKnown RBP10.93□□□□□ -0.66
MSH6-204ENST00000445503 FBXO42Q6P3S6 717 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 RPL22L1Q6P5R6 122 aaKnown RBP10.93□□□□□ -0.66
MSH6-204ENST00000445503 CD200R1LQ6Q8B3 271 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 FAM181AQ8N9Y4 354 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 FAM3CQ92520 227 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ELF4Q99607 663 aaPredicted RBP10.93□□□□□ -0.66
MSH6-204ENST00000445503 ATG5Q9H1Y0 275 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 DUX4Q9UBX2 424 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ERVK-19Q9WJR5 959 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 SCN8AQ9UQD0 1980 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 GOSR2O14653 212 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 GMDSO60547 372 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 RGS11O94810 467 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 RENP00797 406 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 HPXP02790 462 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 CCKBRP32239 447 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ZNF227Q86WZ6 799 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 C7orf61Q8IZ16 206 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 PELI1Q96FA3 418 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ZNF681Q96N22 645 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 FAM83CQ9BQN1 747 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 PRTFDC1Q9NRG1 225 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 FBXL3Q9UKT7 428 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 A0A1W2PPL8 197 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ZIC2O95409 532 aaPredicted RBP10.93□□□□□ -0.66
MSH6-204ENST00000445503 APOC3P02656 99 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 SPARCP09486 303 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 MAOBP27338 520 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 PPP2CBP62714 309 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 PPP2CAP67775 309 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 ZNF85Q03923 595 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 TNK1Q13470 666 aa10.93□□□□□ -0.66
MSH6-204ENST00000445503 HTR4Q13639 388 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms