RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 IER3IP1Q9Y5U9 82 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 A0A1W2PQ72 361 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 LINC00862A6NCI5 91 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 EFCAB7A8K855 629 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 SLC22A5O76082 557 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 RAF1P04049 648 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 NGFRP08138 427 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 AP3S2P59780 193 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 YPEL5P62699 121 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 PSG6Q00889 435 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 TEX261Q6UWH6 196 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 ZNF527Q8NB42 609 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 OR5T3Q8NGG3 340 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 SMAP2Q8WU79 429 aaPredicted RBP10.37□□□□□ -0.75
USP4-205ENST00000431357 CCNL2Q96S94 520 aaPredicted RBP10.37□□□□□ -0.75
USP4-205ENST00000431357 LMAN2LQ9H0V9 348 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 POT1Q9NUX5 634 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 NCDNQ9UBB6 729 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 SCP2D1Q9UJQ7 156 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 GNG8Q9UK08 70 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 AK6Q9Y3D8 172 aaKnown RBP10.37□□□□□ -0.75
USP4-205ENST00000431357 U3KQ87 197 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 GOLGA4Q13439 2230 aaKnown RBP10.37□□□□□ -0.75
USP4-205ENST00000431357 GPR171O14626 319 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 TSC22D2O75157 780 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 HOXB2P14652 356 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 SRMP19623 302 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 HNRNPA2B1P22626 353 aaKnown RBP10.37□□□□□ -0.75
USP4-205ENST00000431357 GDNFP39905 211 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 HCCSP53701 268 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 TCEA2Q15560 299 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 LILRB2Q8N423 598 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 ARL14Q8N4G2 192 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 OR4D9Q8NGE8 314 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 RPS4Y2Q8TD47 263 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 SIPA1Q96FS4 1042 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 SORCS2Q96PQ0 1159 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 G6PC3Q9BUM1 346 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 CLEC4AQ9UMR7 237 aa10.37□□□□□ -0.75
USP4-205ENST00000431357 A0A087WUJ7 227 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 A0A1W2PPK0 400 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 A0A1W2PQF6 199 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 LEUTXA8MZ59 168 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 PEX14O75381 377 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 SNAPC5O75971 98 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 IFNA16P05015 189 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 S1PR1P21453 382 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 RPL4P36578 427 aaKnown RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 NAA10P41227 235 aaPredicted RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 CCR6P51684 374 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 MRPS10P82664 201 aaKnown RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 RPL6Q02878 288 aaKnown RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 ST3GAL2Q16842 350 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ELFN2Q5R3F8 820 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 SLC6A19Q695T7 634 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 KIRREL2Q6UWL6 708 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 DBX2Q6ZNG2 339 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 SLC35F3Q8IY50 421 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 TIGD4Q8IY51 512 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 RFLNBQ8N5W9 214 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF680Q8NEM1 530 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 OR51Q1Q8NH59 317 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 LGALS14Q8TCE9 139 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 C15orf40Q8WUR7 153 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 OR14A2Q96R54 314 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 DDOQ99489 341 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CDCA3Q99618 268 aaPredicted RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 CCDC3Q9BQI4 270 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 NMNAT2Q9BZQ4 307 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 SLC19A3Q9BZV2 496 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF281Q9Y2X9 895 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF337Q9Y3M9 751 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 NPTNQ9Y639 398 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 BLACEA4D250 179 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 MCIDASD6RGH6 385 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 NPIPB9F8W1W9 429 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 GABARAPH6UMI1 98 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 AIPO00170 330 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF593O00488 134 aaPredicted RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 KHNYNO15037 678 aaKnown RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 SSNA1O43805 119 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ADAM11O75078 769 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 TGM6O95932 706 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 MT-ND4P03905 459 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 WNT1P04628 370 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CA3P07451 260 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 PVRP15151 417 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 SPI1P17947 270 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CXCL3P19876 107 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 COL9A1P20849 921 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 LSSP48449 732 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CCR9P51686 369 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 EPHA4P54764 986 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 PRPS1P60891 318 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 DBPQ10586 325 aaPredicted RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 BAMBIQ13145 260 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 CAMK2DQ13557 499 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 RNASE12Q5GAN4 147 aaKnown RBP10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF600Q6ZNG1 722 aa10.36□□□□□ -0.75
USP4-205ENST00000431357 ZNF440Q8IYI8 595 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms