RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 AHSA1O95433 338 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 NPPAP01160 153 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 OR1Q1Q15612 314 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 TAB1Q15750 504 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 VMACQ2NL98 169 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 BEX5Q5H9J7 111 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 ALG10BQ5I7T1 473 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 FBXW9Q5XUX1 488 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 TMEM225Q6GV28 225 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 ULK3Q6PHR2 472 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 C6orf89Q6UWU4 347 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 CASP12Q6UXS9 341 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 GPAT4Q86UL3 456 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 P3H2Q8IVL5 708 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 SLC30A8Q8IWU4 369 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 POU5F2Q8N7G0 328 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 GPR32P1Q8NGA4 272 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 OR8J3Q8NGG0 315 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 RNF217Q8TC41 542 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 DNAJA4Q8WW22 397 aaPredicted RBP13.09□□□□□ -0.31
LIMS4-201ENST00000413601 SLC25A36Q96CQ1 311 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 KTI12Q96EK9 354 aaPredicted RBP13.09□□□□□ -0.31
LIMS4-201ENST00000413601 PLPPR2Q96GM1 343 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 SH3GL1Q99961 368 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 ECSITQ9BQ95 431 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 C12orf10Q9HB07 376 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 TESQ9UGI8 421 aaKnown RBP13.09□□□□□ -0.31
LIMS4-201ENST00000413601 USP22Q9UPT9 525 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 SLC9A8Q9Y2E8 581 aa13.09□□□□□ -0.31
LIMS4-201ENST00000413601 MED13LQ71F56 2210 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 FTCDNL1E5RQL4 147 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SLC22A2O15244 555 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 CNOT4O95628 575 aaKnown RBP13.08□□□□□ -0.32
LIMS4-201ENST00000413601 LGI1O95970 557 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 PNMTP11086 282 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 COX5AP20674 150 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 P2RY4P51582 365 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SEC24CP53992 1094 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 FAPQ12884 760 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 INTS11Q5TA45 600 aaKnown RBP13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SPNS3Q6ZMD2 512 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 PATL1Q86TB9 770 aaKnown RBP13.08□□□□□ -0.32
LIMS4-201ENST00000413601 RANBP3LQ86VV4 465 aaPredicted RBP13.08□□□□□ -0.32
LIMS4-201ENST00000413601 CALHM3Q86XJ0 350 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 ZIC4Q8N9L1 334 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 PCYOX1LQ8NBM8 494 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 OR9K2Q8NGE7 335 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 MFSD8Q8NHS3 518 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SLC26A7Q8TE54 656 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 HSD17B8Q92506 261 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SLC38A4Q969I6 547 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 TAMM41Q96BW9 452 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 RCN3Q96D15 328 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SLC47A1Q96FL8 570 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 ARHGDIGQ99819 225 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 FOXC2Q99958 501 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 PTDSS2Q9BVG9 487 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SF3B5Q9BWJ5 86 aaKnown RBP13.08□□□□□ -0.32
LIMS4-201ENST00000413601 UBTD1Q9HAC8 227 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 TMEM27Q9HBJ8 222 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 PARPBPQ9NWS1 579 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 GID8Q9NWU2 228 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 SELENONQ9NZV5 590 aa13.08□□□□□ -0.32
LIMS4-201ENST00000413601 PRRC2AP48634 2157 aaKnown RBP13.08□□□□□ -0.32
LIMS4-201ENST00000413601 IGKV1D-42A0A075B6H8 117 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 A0A0B4J2E0 115 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 A0A1B0GX12 115 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 PLAUP00749 431 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 C8BP07358 591 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 CD247P20963 164 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 PTNP21246 168 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 FOXG1P55316 489 aaPredicted RBP13.07□□□□□ -0.32
LIMS4-201ENST00000413601 STK11Q15831 433 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 NRF1Q16656 503 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 FAM91A1Q658Y4 838 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 ZNF433Q8N7K0 673 aaPredicted RBP13.07□□□□□ -0.32
LIMS4-201ENST00000413601 OR6T1Q8NGN1 323 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 VANGL1Q8TAA9 524 aaPredicted RBP13.07□□□□□ -0.32
LIMS4-201ENST00000413601 TAAR8Q969N4 342 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 MBD6Q96DN6 1003 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 ZNF583Q96ND8 569 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 ZNF385AQ96PM9 386 aaKnown RBP13.07□□□□□ -0.32
LIMS4-201ENST00000413601 MCHR1Q99705 422 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 ELAC2Q9BQ52 826 aaKnown RBP13.07□□□□□ -0.32
LIMS4-201ENST00000413601 USB1Q9BQ65 265 aaKnown RBP13.07□□□□□ -0.32
LIMS4-201ENST00000413601 EVA1AQ9H8M9 152 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 ASB6Q9NWX5 421 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 SEC14L4Q9UDX3 406 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 MALT1Q9UDY8 824 aa13.07□□□□□ -0.32
LIMS4-201ENST00000413601 A0A087WUJ7 227 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 CCT8L1PA6NM43 557 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 CCDC22O60826 627 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 RAD51DO75771 328 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 COX4I1P13073 169 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 CD53P19397 219 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 GGT1P19440 569 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 GTF2E2P29084 291 aaKnown RBP13.06□□□□□ -0.32
LIMS4-201ENST00000413601 CRYBA2P53672 197 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 NR1H2P55055 460 aa13.06□□□□□ -0.32
LIMS4-201ENST00000413601 CDH12P55289 794 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms