RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 DCAF10Q5QP82 559 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 KDM4DQ6B0I6 523 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 PRSS42Q7Z5A4 293 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 OR6F1Q8NGZ6 308 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 SCARF2Q96GP6 870 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 METTL2AQ96IZ6 378 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 OR51E2Q9H255 320 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 VNN3Q9NY84 501 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 PTPRDP23468 1912 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 WNK2Q9Y3S1 2297 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CADP27708 2225 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 A0A1W2PRG6 482 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 C17orf51A8MQB3 221 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CRYZL1O95825 349 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 C21orf33P30042 268 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 HTR3AP46098 478 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 PRKXP51817 358 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CLRN1P58418 232 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CCDC58Q4VC31 144 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 VHLLQ6RSH7 139 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 TIPARPQ7Z3E1 657 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 SLC46A3Q7Z3Q1 461 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 LRRC56Q8IYG6 542 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 DEPDC4Q8N2C3 294 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 OR52E2Q8NGJ4 325 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 UBE2FQ969M7 185 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 SAMD8Q96LT4 415 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 TIGARQ9NQ88 270 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 MYOTQ9UBF9 498 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 NDRG4Q9ULP0 352 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 GP1BAP07359 652 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 SPARCP09486 303 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 ARAFP10398 606 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CBFBQ13951 182 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 SMU1Q2TAY7 513 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 YOD1Q5VVQ6 348 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 TMPRSS11AQ6ZMR5 421 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CACTIN-AS1Q8N1I8 211 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 PRR7Q8TB68 274 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 FANK1Q8TC84 345 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 COQ8BQ96D53 544 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 CRELD1Q96HD1 420 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 TRNT1Q96Q11 434 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 BARD1Q99728 777 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 GABARAPL1Q9H0R8 117 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 IL1RAPQ9NPH3 570 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 ENOPH1Q9UHY7 261 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 ENPP4Q9Y6X5 453 aa9.44□□□□□ -0.9
COL6A3-205ENST00000392004 FLNBO75369 2602 aaKnown RBP9.44□□□□□ -0.9
COL6A3-205ENST00000392004 PPP1R3DO95685 299 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 RENP00797 406 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 PRKCAP17252 672 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 AZGP1P25311 298 aaKnown RBP9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SNRPNP63162 240 aaKnown RBP9.43□□□□□ -0.9
COL6A3-205ENST00000392004 C17orf67Q0P5P2 114 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 CBLN3Q6UW01 205 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 NRARPQ7Z6K4 114 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 MEIOBQ8N635 442 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 OR51G2Q8NGK0 314 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 OR6N2Q8NGY6 317 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 TMEM203Q969S6 136 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 A0A1B0GWA3 101 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 ANKRD28O15084 1053 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 KIAA0513O60268 411 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 TRHRP34981 398 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-205ENST00000392004 GNALP38405 381 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 DDOSTP39656 456 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 PPICP45877 212 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SQSTM1Q13501 440 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 CAMK2DQ13557 499 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 TAB1Q15750 504 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SMUG1Q53HV7 270 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 KIRREL2Q6UWL6 708 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 MDGA2Q7Z553 956 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 ZAR1Q86SH2 424 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SLC30A8Q8IWU4 369 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF433Q8N7K0 673 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-205ENST00000392004 PSD4Q8NDX1 1056 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SETD6Q8TBK2 473 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 CHAC2Q8WUX2 184 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 TMEM239Q8WW34 195 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 MED30Q96HR3 178 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 HES7Q9BYE0 225 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF462Q96JM2 2506 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SMIM30A4D0T7 59 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 TVP23AA6NH52 213 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 HMX3A6NHT5 357 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 TOX3O15405 576 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-205ENST00000392004 AKR7A3O95154 331 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 ANXA8P13928 327 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 MAN2A2P49641 1150 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 DCAF7P61962 342 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SCN1BQ07699 218 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 MELKQ14680 651 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 SLC10A1Q14973 349 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 FAM220AQ7Z4H9 259 aa9.43□□□□□ -0.9
COL6A3-205ENST00000392004 CLCA1A8K7I4 914 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 CYR61O00622 381 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 RCBTB2O95199 551 aa9.42□□□□□ -0.9
COL6A3-205ENST00000392004 CD79AP11912 226 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms