RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 APBB3O95704 486 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 Q499Y3 187 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 RAET1LQ5VY80 246 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF761Q86XN6 746 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 RHNO1Q9BSD3 238 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 KATNB1Q9BVA0 655 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 PRR14Q9BWN1 585 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC25A37Q9NYZ2 338 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 PAPPAQ13219 1627 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM129A0AVI4 362 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 B4GALT3O60512 393 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 STK17BO94768 372 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 SOHLH1Q5JUK2 328 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 MRPL41Q8IXM3 137 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 RNF128Q8TEB7 428 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 DVL3Q92997 716 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 VSX1Q9NZR4 365 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 NME7Q9Y5B8 376 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 APEHP13798 732 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 FBLP22087 321 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 TNFRSF17Q02223 184 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 RAB33AQ14088 237 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 CLLU1OSQ5K130 101 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 MARCH8Q5T0T0 291 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 PRR22Q8IZ63 422 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF566Q969W8 418 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 NEURL3Q96EH8 262 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 LMF2Q9BU23 707 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 CPEB1Q9BZB8 566 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 PPT2Q9UMR5 302 aa18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 MYO5AQ9Y4I1 1855 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-202ENST00000356786 UBL4AP11441 157 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 AKR1C1Q04828 323 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 BAK1Q16611 211 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 CTF1Q16619 201 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 C17orf99Q6UX52 265 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 SPNS2Q8IVW8 549 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ZBTB44Q8NCP5 570 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ST8SIA2Q92186 375 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ISG20Q96AZ6 181 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 DTD2Q96FN9 168 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 LURAP1Q96LR2 239 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 MYADMQ96S97 322 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 KLF16Q9BXK1 252 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC19A3Q9BZV2 496 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ACER3Q9NUN7 267 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 CIB4A0PJX0 185 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 PIPP12273 146 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ANXA7P20073 488 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 PAN3Q58A45 887 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ADAM5Q6NVV9 412 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 DEFB119Q8N690 84 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 OR52R1Q8NGF1 315 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 RADILQ96JH8 1075 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 DCLRE1CQ96SD1 692 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 CRB3Q9BUF7 120 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ALG12Q9BV10 488 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 RBM24Q9BX46 236 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 LIN7BQ9HAP6 207 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF160Q9HCG1 818 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM100Q9NV29 134 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 GABRR1P24046 479 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 TIGD3Q6B0B8 471 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 OLIG3Q7RTU3 272 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM151BQ8IW70 566 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 MS4A4AQ96JQ5 239 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 BTBD2Q9BX70 525 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 NXF5Q9H1B4 397 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 UBQLN3Q9H347 655 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 IKZF5Q9H5V7 419 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 PLEKHA3Q9HB20 300 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 CCDC163A0A0D9SF12 145 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 A6NIZ1 184 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 A6NLC8 198 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 LCATP04180 440 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 VIPR2P41587 438 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 RAP1BP61224 184 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 SEC61A1P61619 476 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 RAP1AP62834 184 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 FOXK2Q01167 660 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 DPPA4Q7L190 304 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 OR4K15Q8NH41 348 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 ADAMTS18Q8TE60 1221 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 TANKQ92844 425 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 SENP5Q96HI0 755 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 CXCL16Q9H2A7 254 aa18.16■□□□□ 0.5
CCDC88B-202ENST00000356786 KLF8O95600 359 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 ITGB2P05107 769 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 CSF3P09919 207 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 EPHA2P29317 976 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 MAGEB1P43366 347 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 PRDX1Q06830 199 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 DLX2Q07687 328 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 TDGQ13569 410 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 ELOCQ15369 112 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 RPE65Q16518 533 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 GPR139Q6DWJ6 353 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 RFLNAQ6ZTI6 216 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 NDUFAF7Q7L592 441 aa18.15■□□□□ 0.5
CCDC88B-202ENST00000356786 RIMKLAQ8IXN7 391 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms