RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 OR52E4Q8NGH9 312 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 STK35Q8TDR2 534 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 IGFBPL1Q8WX77 278 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 SPATA5L1Q9BVQ7 753 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 ASB6Q9NWX5 421 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 MALT1Q9UDY8 824 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 SLC9A8Q9Y2E8 581 aa16.2■□□□□ 0.18
CLN3-202ENST00000355477 A0A1B0GWA3 101 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 DPRXA6NFQ7 191 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 PDLIM1O00151 329 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 HS3ST1O14792 307 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 TPST2O60704 377 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 SMPD2O60906 423 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 RAD51DO75771 328 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 MFN2O95140 757 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 ITGA5P08648 1049 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 PCBP3P57721 371 aaKnown RBP16.19■□□□□ 0.18
CLN3-202ENST00000355477 BSPH1Q075Z2 132 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 NFYCQ13952 458 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 PPA1Q15181 289 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 TIMM23BQ5SRD1 257 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 C6orf89Q6UWU4 347 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 AKAP1Q92667 903 aaKnown RBP eCLIP16.19■□□□□ 0.18
CLN3-202ENST00000355477 NEUROG1Q92886 237 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 KTI12Q96EK9 354 aaPredicted RBP16.19■□□□□ 0.18
CLN3-202ENST00000355477 ZNF385AQ96PM9 386 aaKnown RBP16.19■□□□□ 0.18
CLN3-202ENST00000355477 ZNF607Q96SK3 696 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 PTDSS2Q9BVG9 487 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 SF3B5Q9BWJ5 86 aaKnown RBP16.19■□□□□ 0.18
CLN3-202ENST00000355477 TAPBPLQ9BX59 468 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 ESRP2Q9H6T0 727 aaKnown RBP16.19■□□□□ 0.18
CLN3-202ENST00000355477 NGBQ9NPG2 151 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 DLL4Q9NR61 685 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 SLC7A10Q9NS82 523 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 PARPBPQ9NWS1 579 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 NPAP1Q9NZP6 1156 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 RPS6KB2Q9UBS0 482 aa16.19■□□□□ 0.18
CLN3-202ENST00000355477 OR5H1A6NKK0 313 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 ELOA3DA6NLF2 546 aaPredicted RBP16.18■□□□□ 0.18
CLN3-202ENST00000355477 CCT8L1PA6NM43 557 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 FTCDNL1E5RQL4 147 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 CD3EP07766 207 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 RPS5P46782 204 aaKnown RBP16.18■□□□□ 0.18
CLN3-202ENST00000355477 ARFIP2P53365 341 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 GUCY1A3Q02108 690 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 CYP51A1Q16850 503 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 ELOA3BQ3SY89 546 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 TSPO2Q5TGU0 170 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 C9orf135Q5VTT2 229 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 TMEM225Q6GV28 225 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 GPAT4Q86UL3 456 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 P2RY8Q86VZ1 359 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 ARMC8Q8IUR7 673 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 P3H2Q8IVL5 708 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 SMYD1Q8NB12 490 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 C11orf65Q8NCR3 313 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 ELOA3Q8NG57 546 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 MFSD8Q8NHS3 518 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 TMEM45BQ96B21 275 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 SLC25A36Q96CQ1 311 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 MUCL1Q96DR8 90 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 KAT8Q9H7Z6 458 aaKnown RBP16.18■□□□□ 0.18
CLN3-202ENST00000355477 RNF115Q9Y4L5 304 aa16.18■□□□□ 0.18
CLN3-202ENST00000355477 IGKV1D-42A0A075B6H8 117 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 A0A1W2PR80 420 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 CIB4A0PJX0 185 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 PRORSD1PA6NEY8 169 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 CLOCKO15516 846 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 SERPINB7O75635 380 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 AHSA1O95433 338 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 VIMP08670 466 aaKnown RBP16.17■□□□□ 0.18
CLN3-202ENST00000355477 TROVE2P10155 538 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLN3-202ENST00000355477 GABRA6Q16445 453 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 DUSP7Q16829 419 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 ADAM5Q6NVV9 412 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 NET1Q7Z628 596 aaPredicted RBP16.17■□□□□ 0.18
CLN3-202ENST00000355477 LRRC75A-AS1Q8N1F1 130 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 KDM8Q8N371 416 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 ZNF611Q8N823 705 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 TAAR8Q969N4 342 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 MUS81Q96NY9 551 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 TRIM2Q9C040 744 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 C12orf10Q9HB07 376 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 SAR1AQ9NR31 198 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 TAS2R16Q9NYV7 291 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 SEC14L4Q9UDX3 406 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 ANGPT4Q9Y264 503 aa16.17■□□□□ 0.18
CLN3-202ENST00000355477 TLN2Q9Y4G6 2542 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 M0QX08 132 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 OPN1SWP03999 348 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 PNMTP11086 282 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 GZMMP51124 257 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 RGS8P57771 180 aaPredicted RBP16.16■□□□□ 0.18
CLN3-202ENST00000355477 RBBP4Q09028 425 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 KLF10Q13118 480 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 OR1Q1Q15612 314 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 ALG10BQ5I7T1 473 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 SHEQ5VZ18 495 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 NANOGP8Q6NSW7 305 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 CREB3L2Q70SY1 520 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms