RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TNFAIP8L1Q8WVP5 186 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 NXPE3Q969Y0 559 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 S100A16Q96FQ6 103 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 KLHL31Q9H511 634 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 C6orf106Q9H6K1 298 aaPredicted RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 TMEM185BQ9H7F4 350 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CACYBPQ9HB71 228 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 GSN-AS1Q9NRJ2 163 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 C2orf42Q9NWW7 574 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 KLHL28Q9NXS3 571 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 EDARQ9UNE0 448 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SIGLEC7Q9Y286 467 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ZNF443Q9Y2A4 671 aaPredicted RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 SLC35A3Q9Y2D2 325 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 PRRC2BQ5JSZ5 2229 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 A0A1B0GW55 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 A0A1W2PR48 441 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 TMEM200CA6NKL6 621 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 OR6C76A6NM76 312 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CTNSO60931 367 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 OBSL1O75147 1896 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 PPP1R3DO95685 299 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CXCL14O95715 111 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CTSLP07711 333 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 GKN3PP0CG01 181 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4L2P0CJ85 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4L3P0CJ86 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4L4P0CJ87 422 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4L5P0CJ88 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4L6P0CJ89 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4L7P0CJ90 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CYBAP13498 195 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 F3P13726 295 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 BMP7P18075 431 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ADRA2CP18825 462 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 EDNRAP25101 427 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SSR2P43308 183 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 NPBWR1P48145 328 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 STARP49675 285 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 PRMT2P55345 433 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ACTC1P68032 377 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ACTA1P68133 377 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 MRPS10P82664 201 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 PCGF3Q3KNV8 242 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ARSIQ5FYB1 569 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 BEX5Q5H9J7 111 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 MRM1Q6IN84 353 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 C11orf88Q6PI97 169 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 RBMS3Q6XE24 437 aaKnown RBP6.24□□□□□ -1.41
VPS39-202ENST00000348544 ARMC10Q8N2F6 343 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SVBPQ8N300 66 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SDR9C7Q8NEX9 313 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 OR56A1Q8NGH5 318 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 OR9A2Q8NGT5 310 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 PXYLP1Q8TE99 480 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ZNRF4Q8WWF5 429 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 SLC35A4Q96G79 324 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 AIF1LQ9BQI0 150 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 CRB3Q9BUF7 120 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 PIGMQ9H3S5 423 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 PELI2Q9HAT8 420 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 IL21Q9HBE4 155 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 TMEM138Q9NPI0 162 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 HAO2Q9NYQ3 351 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 DUX4Q9UBX2 424 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ASF1AQ9Y294 204 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 ATG4BQ9Y4P1 393 aa6.24□□□□□ -1.41
VPS39-202ENST00000348544 A0A1B0GTQ1 180 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 RIIAD1A6NNX1 92 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ZNF879B4DU55 563 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 WASH3PC4AMC7 463 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 H7C417 338 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SULT1C2O00338 296 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 OR1F1O43749 312 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 GLSO94925 669 aaPredicted RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 ABLIM3O94929 683 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 IFNA4P05014 189 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 LAG3P18627 525 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ITPKBP27987 946 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 NDUFS1P28331 727 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 MPIP34949 423 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 MNDAP41218 407 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 HAAOP46952 286 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ANXA11P50995 505 aaKnown RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 NANOS3P60323 173 aaKnown RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 GUCA2AQ02747 115 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 ELAVL2Q12926 359 aaKnown RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 SWI5Q1ZZU3 235 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 C9orf64Q5T6V5 341 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 YOD1Q5VVQ6 348 aaPredicted RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 RPL22L1Q6P5R6 122 aaKnown RBP6.23□□□□□ -1.41
VPS39-202ENST00000348544 MAMSTRQ6ZN01 415 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 GLB1L2Q8IW92 636 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SYS1Q8N2H4 156 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 KCNRGQ8N5I3 272 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 SLC16A11Q8NCK7 471 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 NUP43Q8NFH3 380 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 OR51S1Q8NGJ8 323 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 OR6N1Q8NGY5 312 aa6.23□□□□□ -1.41
VPS39-202ENST00000348544 OR51A7Q8NH64 312 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms