RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 GABRA6Q16445 453 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 ZSWIM7Q19AV6 140 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 OR7E24Q6IFN5 339 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 AAED1Q7RTV5 226 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 BBS10Q8TAM1 723 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 C3orf49Q96BT1 292 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 ATP6V1G3Q96LB4 118 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 A4GALTQ9NPC4 353 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 IFT52Q9Y366 437 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 TGDSO95455 350 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 CDH2P19022 906 aaPredicted RBP17.15■□□□□ 0.34
LIME1-201ENST00000309546 PTAFRP25105 342 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 AQP5P55064 265 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 TTMPQ5BVD1 217 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 C1orf140Q5VVS0 124 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 TMEM225Q6GV28 225 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 TMEM45BQ96B21 275 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 SPDL1Q96EA4 605 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 HS6ST2Q96MM7 605 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 MUS81Q96NY9 551 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 ZNF385AQ96PM9 386 aaKnown RBP17.15■□□□□ 0.34
LIME1-201ENST00000309546 TRAF4Q9BUZ4 470 aaPredicted RBP17.15■□□□□ 0.34
LIME1-201ENST00000309546 SLC25A37Q9NYZ2 338 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 DCTN4Q9UJW0 460 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 MGAT4BQ9UQ53 548 aa17.15■□□□□ 0.34
LIME1-201ENST00000309546 HEATR1Q9H583 2144 aaKnown RBP17.14■□□□□ 0.33
LIME1-201ENST00000309546 PDLIM1O00151 329 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 AHSA1O95433 338 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 HOXB9P17482 250 aaPredicted RBP17.14■□□□□ 0.33
LIME1-201ENST00000309546 CD40P25942 277 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 MRPL19P49406 292 aaKnown RBP17.14■□□□□ 0.33
LIME1-201ENST00000309546 TGFBR3Q03167 851 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 ETFDHQ16134 617 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 GCNT6Q5T4J0 391 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 PRAMEF8Q5VWM4 474 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 PRAMEF7Q5VXH5 474 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 BLOC1S3Q6QNY0 202 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 FUNDC1Q8IVP5 155 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 NFKBIDQ8NI38 313 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 SLC25A36Q96CQ1 311 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 RADILQ96JH8 1075 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 CCDC28BQ9BUN5 200 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 SF3B5Q9BWJ5 86 aaKnown RBP17.14■□□□□ 0.33
LIME1-201ENST00000309546 SLCO5A1Q9H2Y9 848 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 BCL2L10Q9HD36 194 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 SLAMF8Q9P0V8 285 aa17.14■□□□□ 0.33
LIME1-201ENST00000309546 GDF2Q9UK05 429 aaPredicted RBP17.14■□□□□ 0.33
LIME1-201ENST00000309546 FN1P02751 2386 aaKnown RBP17.14■□□□□ 0.33
LIME1-201ENST00000309546 NSD1Q96L73 2696 aaPredicted RBP17.13■□□□□ 0.33
LIME1-201ENST00000309546 TMEM229AB2RXF0 380 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 RNF223E7ERA6 249 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 NDUFS7O75251 213 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 KRT33AO76009 404 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 CD8AP01732 235 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 IGHV4-39P01824 125 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 BMP2P12643 396 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 ACVR1BP36896 505 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 SLC25A3Q00325 362 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 PAGE3Q5JUK9 113 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 LRIF1Q5T3J3 769 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 AGAP6Q5VW22 663 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 KLHL24Q6TFL4 600 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 MSRB3Q8IXL7 192 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 C17orf78Q8N4C9 275 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 ZIC4Q8N9L1 334 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 WDR31Q8NA23 367 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 POMGNT2Q8NAT1 580 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 MAPK1IP1LQ8NDC0 245 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 C1orf162Q8NEQ5 155 aaPredicted RBP17.13■□□□□ 0.33
LIME1-201ENST00000309546 AMBRA1Q9C0C7 1298 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 SLC17A5Q9NRA2 495 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 RPS6KB2Q9UBS0 482 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 AMDHD2Q9Y303 409 aa17.13■□□□□ 0.33
LIME1-201ENST00000309546 ELOA3DA6NLF2 546 aaPredicted RBP17.12■□□□□ 0.33
LIME1-201ENST00000309546 INAFM1C9JVW0 142 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 E7EQL1 145 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 ARAFP10398 606 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 GTF2E2P29084 291 aaKnown RBP17.12■□□□□ 0.33
LIME1-201ENST00000309546 MPGP29372 298 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 RPS5P46782 204 aaKnown RBP17.12■□□□□ 0.33
LIME1-201ENST00000309546 PPP2R2BQ00005 443 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 ELOA3BQ3SY89 546 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 AGKQ53H12 422 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 B3GLCTQ6Y288 498 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 DTX2Q86UW9 622 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 DEPDC4Q8N2C3 294 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 C10orf111Q8N326 155 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 ELOA3Q8NG57 546 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 STK35Q8TDR2 534 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 VAPAQ9P0L0 249 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.12■□□□□ 0.33
LIME1-201ENST00000309546 PRDM4Q9UKN5 801 aa17.12■□□□□ 0.33
LIME1-201ENST00000309546 CR1P17927 2039 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 ETS2P15036 469 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 PPIBP23284 216 aaKnown RBP17.11■□□□□ 0.33
LIME1-201ENST00000309546 PRKAR1BP31321 381 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 SELENOPP49908 381 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 P2RY4P51582 365 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 LGALS3BPQ08380 585 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 SQLEQ14534 574 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms