RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PHF7Q9BWX1 381 aaPredicted RBP18.34■□□□□ 0.53
VPS53-201ENST00000291074 NLKQ9UBE8 527 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 NOX1Q9Y5S8 564 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 RNF215Q9Y6U7 377 aa18.34■□□□□ 0.53
VPS53-201ENST00000291074 FER1L5A0AVI2 2057 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 A0A0B4J203 849 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 TEX13CA0A0J9YWL9 993 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 CDC14CA4D256 554 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 RHPN2P1A8MT19 583 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 LANCL1O43813 399 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 OR2T7P0C7T2 308 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 UBL4AP11441 157 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 MYF5P13349 255 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 GDI2P50395 445 aaKnown RBP18.33■□□□□ 0.53
VPS53-201ENST00000291074 RPS4XP62701 263 aaKnown RBP18.33■□□□□ 0.53
VPS53-201ENST00000291074 RACK1P63244 317 aaKnown RBP18.33■□□□□ 0.53
VPS53-201ENST00000291074 TRAM1Q15629 374 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 C14orf28Q4W4Y0 310 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 OR2T27Q8NH04 317 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 GAL3ST4Q96RP7 486 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 DDOQ99489 341 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 RTN4RQ9BZR6 473 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 UBQLN4Q9NRR5 601 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 RBFOX1Q9NWB1 397 aaKnown RBP18.33■□□□□ 0.53
VPS53-201ENST00000291074 CLEC4AQ9UMR7 237 aa18.33■□□□□ 0.53
VPS53-201ENST00000291074 A0A1B0GVT2 93 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 HMX3A6NHT5 357 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 UTS2O95399 124 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 TFPIP10646 304 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 GGTLC2Q14390 218 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 CDK5R1Q15078 307 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 ZNF57Q68EA5 555 aaPredicted RBP18.33■□□□□ 0.52
VPS53-201ENST00000291074 PLET1Q6UQ28 207 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 TMEM151BQ8IW70 566 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 PRSS58Q8IYP2 241 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 SCAIQ8N9R8 606 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 POMGNT2Q8NAT1 580 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 SNX33Q8WV41 574 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 TSSK2Q96PF2 358 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 ADOQ96SZ5 270 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 PDCD1LG2Q9BQ51 273 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 TP63Q9H3D4 680 aaPredicted RBP18.33■□□□□ 0.52
VPS53-201ENST00000291074 CYSLTR2Q9NS75 346 aa18.33■□□□□ 0.52
VPS53-201ENST00000291074 IDSB3KWA1 339 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 LMO7DNF2Z398 122 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 DDOSTP39656 456 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 INPP1P49441 399 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 CSNK1EP49674 416 aaKnown RBP18.32■□□□□ 0.52
VPS53-201ENST00000291074 DIO1P49895 249 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 CCDC85BQ15834 202 aaPredicted RBP18.32■□□□□ 0.52
VPS53-201ENST00000291074 WBP2NLQ6ICG8 309 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 ATG4DQ86TL0 474 aaPredicted RBP18.32■□□□□ 0.52
VPS53-201ENST00000291074 LRRC28Q86X40 367 aaPredicted RBP18.32■□□□□ 0.52
VPS53-201ENST00000291074 TRMT10AQ8TBZ6 339 aaKnown RBP18.32■□□□□ 0.52
VPS53-201ENST00000291074 THAP4Q8WY91 577 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 SLC7A6Q92536 515 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 KCNJ15Q99712 375 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 PCNX3Q9H6A9 2034 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 H3BMH7 237 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 FAM157BP0CG42 384 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 PRKAR1AP10644 381 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 PTBP1P26599 531 aaKnown RBP eCLIP18.32■□□□□ 0.524e-7■■■■■ 29.2
VPS53-201ENST00000291074 LEG1Q6P5S2 330 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 OR5H6Q8NGV6 325 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 OR14A16Q8NHC5 309 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 SMIM19Q96E16 107 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 HDHD2Q9H0R4 259 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 NCDNQ9UBB6 729 aa18.32■□□□□ 0.52
VPS53-201ENST00000291074 PRR32B1ATL7 298 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 SCDO00767 359 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 OGG1O15527 345 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 IL33O95760 270 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 CDKN2AP42771 156 aaKnown RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 SMAD4Q13485 552 aaKnown RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 CDONQ4KMG0 1287 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 PAMR1Q6UXH9 720 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 NANOGNBQ7Z5D8 188 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 OR7G1Q8NGA0 311 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 UPRTQ96BW1 309 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ORAI1Q96D31 301 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ZDHHC12Q96GR4 267 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 FYTTD1Q96QD9 318 aaKnown RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 OR14A2Q96R54 314 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 UBL7Q96S82 380 aaPredicted RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 PELOQ9BRX2 385 aaKnown RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 RANGRFQ9HD47 186 aaPredicted RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 RPRD1BQ9NQG5 326 aaKnown RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 FAM240BA0A1B0GVZ2 78 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ARPC3O15145 178 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 RAB3BP20337 219 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 GBX2P52951 348 aaPredicted RBP18.31■□□□□ 0.52
VPS53-201ENST00000291074 HNRNPKP61978 463 aaKnown RBP eCLIP18.31■□□□□ 0.52
VPS53-201ENST00000291074 ACTA2P62736 377 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ACTG2P63267 376 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 SIRPAP78324 504 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 EGR4Q05215 589 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 LGALS3BPQ08380 585 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ZNF74Q16587 644 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ZFP69Q49AA0 526 aa18.31■□□□□ 0.52
VPS53-201ENST00000291074 ASB18Q6ZVZ8 466 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms