RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF182P17025 639 aaPredicted RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CCL11P51671 97 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CTBP2P56545 445 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 EEF1A1P68104 462 aaKnown RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 PRKCDQ05655 676 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 GXYLT1Q4G148 440 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 LRRC69Q6ZNQ3 347 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 PLCZ1Q86YW0 608 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 CCDC103Q8IW40 242 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SLC35F2Q8IXU6 374 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 ZFP41Q8N8Y5 198 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 GPER1Q99527 375 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 FBXL4Q9UKA2 621 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 TCFL5Q9UL49 500 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 SPTBN2O15020 2390 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 A0A0B4J2E0 115 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 A0A1B0GX12 115 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 S1PR1P21453 382 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 MAPK3P27361 379 aaPredicted RBP10.6□□□□□ -0.71
VPS4A-201ENST00000254950 OCLNQ16625 522 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 FAM131AQ6UXB0 335 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 RPTNQ6XPR3 784 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 DGAT2L6Q6ZPD8 337 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 FAM26EQ8N5C1 309 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 OR4F15Q8NGB8 312 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 GIMAP5Q96F15 307 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 INTS14Q96SY0 518 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 KCNS3Q9BQ31 491 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 MED20Q9H944 212 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 INPP5EQ9NRR6 644 aa10.6□□□□□ -0.71
VPS4A-201ENST00000254950 TRBV2A0A0J9YWF9 115 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 TEX51A0A1B0GUA7 166 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 RIDAP52758 137 aaKnown RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ADAM8P78325 824 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 MRPS15P82914 257 aaKnown RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 TEKQ02763 1124 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 CEBPEQ15744 281 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 C16orf47Q6ZP98 133 aaPredicted RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF100Q8IYN0 542 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 MS4A15Q8N5U1 240 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 OR4C15Q8NGM1 316 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 Q96M85 177 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 SLC25A19Q9HC21 320 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 A0A087WUJ7 227 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 SOX3P41225 446 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 GPR85P60893 370 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 RPS18P62269 152 aaKnown RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 RHAGQ02094 409 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ZAR1Q86SH2 424 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF321PQ8N8H1 164 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 SLC37A3Q8NCC5 494 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ZBTB44Q8NCP5 570 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 BCL7BQ9BQE9 202 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 GPR87Q9BY21 358 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 FKRPQ9H9S5 495 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 OSGIN1Q9UJX0 560 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 PCDHGA1Q9Y5H4 931 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 CDH23Q9H251 3354 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 RP1P56715 2156 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 TVP23AA6NH52 213 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 TFECO14948 347 aaPredicted RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 EIF1BO60739 113 aaKnown RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 IGHG1P01857 330 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 SERPINA7P05543 415 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 CSNK1A1P48729 337 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 CTU2Q2VPK5 515 aaKnown RBP10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF404Q494X3 552 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 IDNKQ5T6J7 187 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 FAM205BPQ63HN1 556 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 NPSR1Q6W5P4 371 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 MRGPRX4Q96LA9 322 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 NMNAT3Q96T66 252 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 COMMD3Q9UBI1 195 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ACAD8Q9UKU7 415 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 STUB1Q9UNE7 303 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 POLHQ9Y253 713 aa10.59□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF20P17024 532 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 GADD45AP24522 165 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 HTR1FP30939 366 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 OMPP47874 163 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ODF4Q2M2E3 257 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 RGS21Q2M5E4 152 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 SYT14P1Q58G82 188 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 H1FNTQ75WM6 255 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 FGD2Q7Z6J4 655 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 GRAMD2AQ8IUY3 354 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF283Q8N7M2 679 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 POGLUT1Q8NBL1 392 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 NEIL3Q8TAT5 605 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 BRIX1Q8TDN6 353 aaKnown RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 TGIF2Q9GZN2 237 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 PAK1IP1Q9NWT1 392 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 NTMQ9P121 344 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 DOCK9Q9BZ29 2069 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 C21orf140B9A014 251 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 M0R082 166 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 SOCS6O14544 535 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ACP1P24666 158 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF117Q03924 483 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms