RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 NIP7Q9Y221 180 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLN3-248ENST00000636355 CARMIL3Q8ND23 1372 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 EYA2O00167 538 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 EPB41L2O43491 1005 aaKnown RBP12.95□□□□□ -0.34
CLN3-248ENST00000636355 ZPR1O75312 459 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 SASH1O94885 1247 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 IFIT5Q13325 482 aaKnown RBP12.95□□□□□ -0.34
CLN3-248ENST00000636355 FAM89AQ96GI7 184 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 IL1RAPL2Q9NP60 686 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 ECHDC1Q9NTX5 307 aa12.95□□□□□ -0.34
CLN3-248ENST00000636355 NRXN2Q9P2S2 1712 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 SDSP20132 328 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 TBC1D9Q6ZT07 1266 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 C16orf71Q8IYS4 520 aaPredicted RBP12.94□□□□□ -0.34
CLN3-248ENST00000636355 TTLL11Q8NHH1 800 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 PI4K2BQ8TCG2 481 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 DDRGK1Q96HY6 314 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 TBC1D32Q96NH3 1257 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 CHMP3Q9Y3E7 222 aa12.94□□□□□ -0.34
CLN3-248ENST00000636355 TRIM37O94972 964 aa12.93□□□□□ -0.34
CLN3-248ENST00000636355 CCDC152Q4G0S7 254 aa12.93□□□□□ -0.34
CLN3-248ENST00000636355 AACSQ86V21 672 aa12.93□□□□□ -0.34
CLN3-248ENST00000636355 AKAP2Q9Y2D5 859 aa12.93□□□□□ -0.34
CLN3-248ENST00000636355 ANKRD18BA2A2Z9 1011 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 RFC4P35249 363 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 TNNI3KQ59H18 835 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 SUSD4Q5VX71 490 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 ATG9AQ7Z3C6 839 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 CNTROBQ8N137 903 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 SIL1Q9H173 461 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 LRRC4BQ9NT99 713 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 FPGT-TNNI3KV9GXZ4 949 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 MYH7P12883 1935 aa12.92□□□□□ -0.34
CLN3-248ENST00000636355 REC8O95072 547 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 ITGA6P23229 1130 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 TXNRD1Q16881 649 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 TAF7LQ5H9L4 462 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 SLC10A5Q5PT55 438 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 TRAPPC3LQ5T215 181 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 FLAD1Q8NFF5 587 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 JARID2Q92833 1246 aaPredicted RBP12.91□□□□□ -0.34
CLN3-248ENST00000636355 EAF2Q96CJ1 260 aaPredicted RBP12.91□□□□□ -0.34
CLN3-248ENST00000636355 BCL2L12Q9HB09 334 aa12.91□□□□□ -0.34
CLN3-248ENST00000636355 TNRC6CQ9HCJ0 1690 aaKnown RBP12.91□□□□□ -0.34
CLN3-248ENST00000636355 HIP1O00291 1037 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 RBM25P49756 843 aaKnown RBP12.9□□□□□ -0.34
CLN3-248ENST00000636355 TFCP2Q12800 502 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 RTL5Q5HYW3 569 aaPredicted RBP12.9□□□□□ -0.34
CLN3-248ENST00000636355 USPL1Q5W0Q7 1092 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 NUTM1Q86Y26 1132 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 CCDC125Q86Z20 511 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 IL27Q8NEV9 243 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 KLHDC4Q8TBB5 520 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLN3-248ENST00000636355 ARHGEF1Q92888 912 aaKnown RBP12.9□□□□□ -0.34
CLN3-248ENST00000636355 SETDB2Q96T68 719 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 GREM2Q9H772 168 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 CEP126Q9P2H0 1117 aa12.9□□□□□ -0.34
CLN3-248ENST00000636355 MROH5Q6ZUA9 1318 aa12.89□□□□□ -0.35
CLN3-248ENST00000636355 RAD50Q92878 1312 aa12.89□□□□□ -0.35
CLN3-248ENST00000636355 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.89□□□□□ -0.35
CLN3-248ENST00000636355 ATP5JP18859 108 aa12.89□□□□□ -0.35
CLN3-248ENST00000636355 SF3B3Q15393 1217 aaKnown RBP12.89□□□□□ -0.35
CLN3-248ENST00000636355 EVI5LQ96CN4 794 aa12.89□□□□□ -0.35
CLN3-248ENST00000636355 CDC5LQ99459 802 aaKnown RBP12.89□□□□□ -0.35
CLN3-248ENST00000636355 KCNQ4P56696 695 aa12.88□□□□□ -0.35
CLN3-248ENST00000636355 TBC1D9BQ66K14 1250 aa12.88□□□□□ -0.35
CLN3-248ENST00000636355 TPTE2Q6XPS3 522 aa12.88□□□□□ -0.35
CLN3-248ENST00000636355 IPO9Q96P70 1041 aaKnown RBP12.88□□□□□ -0.35
CLN3-248ENST00000636355 DBNLQ9UJU6 430 aaKnown RBP12.88□□□□□ -0.35
CLN3-248ENST00000636355 DOCK2Q92608 1830 aa12.88□□□□□ -0.35
CLN3-248ENST00000636355 LRRC37AA6NMS7 1700 aa12.88□□□□□ -0.35
CLN3-248ENST00000636355 SEC24BO95487 1268 aa12.87□□□□□ -0.35
CLN3-248ENST00000636355 MFAP1P55081 439 aaKnown RBP12.87□□□□□ -0.35
CLN3-248ENST00000636355 LDHAL6AQ6ZMR3 332 aa12.87□□□□□ -0.35
CLN3-248ENST00000636355 NBPF5PQ86XG9 351 aaPredicted RBP12.87□□□□□ -0.35
CLN3-248ENST00000636355 VGLL2Q8N8G2 317 aa12.87□□□□□ -0.35
CLN3-248ENST00000636355 C22orf23Q9BZE7 217 aa12.87□□□□□ -0.35
CLN3-248ENST00000636355 RIPOR2Q9Y4F9 1068 aa12.87□□□□□ -0.35
CLN3-248ENST00000636355 AKAP11Q9UKA4 1901 aa12.87□□□□□ -0.35
CLN3-248ENST00000636355 DUOX1Q9NRD9 1551 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 TRIM6-TRIM34B2RNG4 842 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 APBA3O96018 575 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 CHMLP26374 656 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 IGHMBP2P38935 993 aaKnown RBP12.86□□□□□ -0.35
CLN3-248ENST00000636355 TSHZ3Q63HK5 1081 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 RUFY2Q8WXA3 655 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 AKT1S1Q96B36 256 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 ZNF512BQ96KM6 892 aaPredicted RBP12.86□□□□□ -0.35
CLN3-248ENST00000636355 SRP68Q9UHB9 627 aaKnown RBP12.86□□□□□ -0.35
CLN3-248ENST00000636355 MYH13Q9UKX3 1938 aa12.86□□□□□ -0.35
CLN3-248ENST00000636355 A0A1B0GUL7 405 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 HCLS1P14317 486 aaPredicted RBP12.85□□□□□ -0.35
CLN3-248ENST00000636355 PUM3Q15397 648 aaKnown RBP12.85□□□□□ -0.35
CLN3-248ENST00000636355 LRRC24Q50LG9 513 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 METTL24Q5JXM2 366 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 AMIGO3Q86WK7 504 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 SYNE4Q8N205 404 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 PROM2Q8N271 834 aa12.85□□□□□ -0.35
CLN3-248ENST00000636355 ESYT1Q9BSJ8 1104 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms