RNA–Protein interactions for RNA: ENST00000626274.2

PNKP-219, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 752 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-219ENST00000626274 DICER1Q9UPY3 1922 aaKnown RBP25.39■■□□□ 1.66
PNKP-219ENST00000626274 GRAPQ13588 217 aa25.39■■□□□ 1.66
PNKP-219ENST00000626274 OLFM4Q6UX06 510 aa25.39■■□□□ 1.66
PNKP-219ENST00000626274 UBE3BQ7Z3V4 1068 aa25.39■■□□□ 1.66
PNKP-219ENST00000626274 GRAPLQ8TC17 118 aaPredicted RBP25.39■■□□□ 1.66
PNKP-219ENST00000626274 PRELPP51888 382 aa25.38■■□□□ 1.65
PNKP-219ENST00000626274 TMX4Q9H1E5 349 aaPredicted RBP25.38■■□□□ 1.65
PNKP-219ENST00000626274 RARSP54136 660 aaKnown RBP25.37■■□□□ 1.65
PNKP-219ENST00000626274 BRPF1P55201 1214 aaPredicted RBP25.37■■□□□ 1.65
PNKP-219ENST00000626274 CCDC152Q4G0S7 254 aa25.37■■□□□ 1.65
PNKP-219ENST00000626274 GRIPAP1Q4V328 841 aa25.37■■□□□ 1.65
PNKP-219ENST00000626274 SRCIN1Q9C0H9 1055 aa25.37■■□□□ 1.65
PNKP-219ENST00000626274 ATP6V0A2Q9Y487 856 aa25.37■■□□□ 1.65
PNKP-219ENST00000626274 ALDH1L1O75891 902 aa25.36■■□□□ 1.65
PNKP-219ENST00000626274 FKBP4Q02790 459 aaKnown RBP eCLIP25.36■■□□□ 1.65
PNKP-219ENST00000626274 CTSWP56202 376 aa25.35■■□□□ 1.65
PNKP-219ENST00000626274 TMC4Q7Z404 712 aa25.35■■□□□ 1.65
PNKP-219ENST00000626274 SP8Q8IXZ3 490 aa25.35■■□□□ 1.65
PNKP-219ENST00000626274 SNED1Q8TER0 1413 aa25.35■■□□□ 1.65
PNKP-219ENST00000626274 CASP7P55210 303 aa25.34■■□□□ 1.65
PNKP-219ENST00000626274 PLA2G12BQ9BX93 195 aa25.34■■□□□ 1.65
PNKP-219ENST00000626274 TIAM2Q8IVF5 1701 aa25.33■■□□□ 1.65
PNKP-219ENST00000626274 CELF1Q92879 486 aaKnown RBP25.33■■□□□ 1.65
PNKP-219ENST00000626274 PSMD1Q99460 953 aa25.33■■□□□ 1.65
PNKP-219ENST00000626274 NOB1Q9ULX3 412 aaKnown RBP25.33■■□□□ 1.65
PNKP-219ENST00000626274 ZC3H4Q9UPT8 1303 aaKnown RBP25.33■■□□□ 1.64
PNKP-219ENST00000626274 GRM8O00222 908 aa25.32■■□□□ 1.64
PNKP-219ENST00000626274 TTLL11Q8NHH1 800 aa25.32■■□□□ 1.64
PNKP-219ENST00000626274 CCDC85AQ96PX6 553 aaPredicted RBP25.32■■□□□ 1.64
PNKP-219ENST00000626274 SEC31BQ9NQW1 1179 aa25.32■■□□□ 1.64
PNKP-219ENST00000626274 C9orf78Q9NZ63 289 aaPredicted RBP25.32■■□□□ 1.64
PNKP-219ENST00000626274 RPS8P62241 208 aaKnown RBP25.31■■□□□ 1.64
PNKP-219ENST00000626274 SLC51AQ86UW1 340 aa25.31■■□□□ 1.64
PNKP-219ENST00000626274 LRRC37AA6NMS7 1700 aa25.31■■□□□ 1.64
PNKP-219ENST00000626274 KIF16BQ96L93 1317 aa25.31■■□□□ 1.64
PNKP-219ENST00000626274 ZNF526Q8TF50 670 aaPredicted RBP25.3■■□□□ 1.64
PNKP-219ENST00000626274 API5Q9BZZ5 524 aaKnown RBP25.3■■□□□ 1.64
PNKP-219ENST00000626274 ZNF277Q9NRM2 450 aaPredicted RBP25.3■■□□□ 1.64
PNKP-219ENST00000626274 COL4A1P02462 1669 aa25.29■■□□□ 1.64
PNKP-219ENST00000626274 GPBP1L1Q9HC44 474 aaPredicted RBP25.29■■□□□ 1.64
PNKP-219ENST00000626274 RTL9Q8NET4 1388 aa25.29■■□□□ 1.64
PNKP-219ENST00000626274 IARSP41252 1262 aaKnown RBP25.28■■□□□ 1.64
PNKP-219ENST00000626274 MPNDQ8N594 471 aa25.28■■□□□ 1.64
PNKP-219ENST00000626274 CSF1RP07333 972 aa25.27■■□□□ 1.64
PNKP-219ENST00000626274 ARHGAP45Q92619 1136 aa25.27■■□□□ 1.64
PNKP-219ENST00000626274 CDC5LQ99459 802 aaKnown RBP25.27■■□□□ 1.64
PNKP-219ENST00000626274 GREM2Q9H772 168 aa25.27■■□□□ 1.64
PNKP-219ENST00000626274 DPP8Q6V1X1 898 aaPredicted RBP25.26■■□□□ 1.63
PNKP-219ENST00000626274 ANKRD18AQ8IVF6 992 aa25.26■■□□□ 1.63
PNKP-219ENST00000626274 SUPT20HQ8NEM7 779 aa25.26■■□□□ 1.63
PNKP-219ENST00000626274 IPO8O15397 1037 aaKnown RBP25.25■■□□□ 1.63
PNKP-219ENST00000626274 BCAR3O75815 825 aa25.25■■□□□ 1.63
PNKP-219ENST00000626274 UTYO14607 1347 aa25.25■■□□□ 1.63
PNKP-219ENST00000626274 SPEF2Q9C093 1822 aa25.25■■□□□ 1.63
PNKP-219ENST00000626274 KDM2BQ8NHM5 1336 aa25.24■■□□□ 1.63
PNKP-219ENST00000626274 CCT4P50991 539 aaKnown RBP25.24■■□□□ 1.63
PNKP-219ENST00000626274 FOXO4P98177 505 aa25.24■■□□□ 1.63
PNKP-219ENST00000626274 RTFDC1Q9BY42 306 aaPredicted RBP25.24■■□□□ 1.63
PNKP-219ENST00000626274 NBPF7P0C2Y1 421 aaPredicted RBP25.23■■□□□ 1.63
PNKP-219ENST00000626274 VPS33BQ9H267 617 aa25.23■■□□□ 1.63
PNKP-219ENST00000626274 NSFL1CQ9UNZ2 370 aaKnown RBP25.23■■□□□ 1.63
PNKP-219ENST00000626274 GLTPD2A6NH11 291 aa25.22■■□□□ 1.63
PNKP-219ENST00000626274 ITGA6P23229 1130 aa25.22■■□□□ 1.63
PNKP-219ENST00000626274 FAM161AQ3B820 660 aa25.22■■□□□ 1.63
PNKP-219ENST00000626274 DPY19L2Q6NUT2 758 aa25.22■■□□□ 1.63
PNKP-219ENST00000626274 EPHA10Q5JZY3 1008 aa25.21■■□□□ 1.63
PNKP-219ENST00000626274 LARGE2Q8N3Y3 721 aa25.21■■□□□ 1.63
PNKP-219ENST00000626274 JDP2Q8WYK2 163 aa25.21■■□□□ 1.63
PNKP-219ENST00000626274 FRAT1Q92837 279 aaPredicted RBP25.21■■□□□ 1.63
PNKP-219ENST00000626274 USP44Q9H0E7 712 aa25.21■■□□□ 1.63
PNKP-219ENST00000626274 DUOX1Q9NRD9 1551 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 ANKRD18BA2A2Z9 1011 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 PPIP5K2O43314 1243 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 IGHMBP2P38935 993 aaKnown RBP25.2■■□□□ 1.62
PNKP-219ENST00000626274 GPSM2P81274 684 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 LMBR1LQ6UX01 489 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 SUCLG2Q96I99 432 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 BSDC1Q9NW68 430 aaPredicted RBP25.2■■□□□ 1.62
PNKP-219ENST00000626274 CHMP3Q9Y3E7 222 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 LTBP1Q14766 1721 aa25.2■■□□□ 1.62
PNKP-219ENST00000626274 ATF7IPQ6VMQ6 1270 aa25.19■■□□□ 1.62
PNKP-219ENST00000626274 IFIT5Q13325 482 aaKnown RBP25.18■■□□□ 1.62
PNKP-219ENST00000626274 AOC3Q16853 763 aa25.18■■□□□ 1.62
PNKP-219ENST00000626274 KAZALD1Q96I82 304 aa25.18■■□□□ 1.62
PNKP-219ENST00000626274 PODXL2Q9NZ53 605 aa25.18■■□□□ 1.62
PNKP-219ENST00000626274 COL4A5P29400 1685 aa25.17■■□□□ 1.62
PNKP-219ENST00000626274 TRIM27P14373 513 aa25.17■■□□□ 1.62
PNKP-219ENST00000626274 ZKSCAN2Q63HK3 967 aa25.17■■□□□ 1.62
PNKP-219ENST00000626274 NMRK2Q9NPI5 230 aa25.17■■□□□ 1.62
PNKP-219ENST00000626274 ANKIB1Q9P2G1 1089 aa25.17■■□□□ 1.62
PNKP-219ENST00000626274 C6orf229H3BNL8 230 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 FZD9O00144 591 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 KIAA2012Q0VF49 1180 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 CCDC57Q2TAC2 916 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 INTS3Q68E01 1043 aaKnown RBP25.16■■□□□ 1.62
PNKP-219ENST00000626274 NIM1KQ8IY84 436 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 MPHOSPH8Q99549 860 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 POLLQ9UGP5 575 aa25.16■■□□□ 1.62
PNKP-219ENST00000626274 XDHP47989 1333 aa25.15■■□□□ 1.62
PNKP-219ENST00000626274 TBC1D16Q8TBP0 767 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms