RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 ZNF521Q96K83 1311 aa19■□□□□ 0.63
LINC00643-205ENST00000623219 ZNF541Q9H0D2 1346 aa19■□□□□ 0.63
LINC00643-205ENST00000623219 PI4KAP2A4QPH2 592 aa19■□□□□ 0.63
LINC00643-205ENST00000623219 IRS4O14654 1257 aaPredicted RBP19■□□□□ 0.63
LINC00643-205ENST00000623219 TCERG1O14776 1098 aaKnown RBP19■□□□□ 0.63
LINC00643-205ENST00000623219 DDNO94850 711 aaPredicted RBP19■□□□□ 0.63
LINC00643-205ENST00000623219 PCCAP05165 728 aaPredicted RBP19■□□□□ 0.63
LINC00643-205ENST00000623219 RTL5Q5HYW3 569 aaPredicted RBP19■□□□□ 0.63
LINC00643-205ENST00000623219 PI4KAP1Q8N8J0 262 aa19■□□□□ 0.63
LINC00643-205ENST00000623219 POTECB2RU33 542 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 FZD9O00144 591 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 SLC4A2P04920 1241 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 EXOSC9Q06265 439 aaKnown RBP18.99■□□□□ 0.63
LINC00643-205ENST00000623219 NEXNQ0ZGT2 675 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 SP8Q8IXZ3 490 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 SMC1BQ8NDV3 1235 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 JDP2Q8WYK2 163 aa18.99■□□□□ 0.63
LINC00643-205ENST00000623219 L3MBTL3Q96JM7 780 aaPredicted RBP18.99■□□□□ 0.63
LINC00643-205ENST00000623219 SPINK5Q9NQ38 1064 aaPredicted RBP18.99■□□□□ 0.63
LINC00643-205ENST00000623219 VAMP4O75379 141 aa18.98■□□□□ 0.63
LINC00643-205ENST00000623219 FLIIQ13045 1269 aa18.98■□□□□ 0.63
LINC00643-205ENST00000623219 SUPT20HQ8NEM7 779 aa18.98■□□□□ 0.63
LINC00643-205ENST00000623219 VPS33BQ9H267 617 aa18.98■□□□□ 0.63
LINC00643-205ENST00000623219 TRPM7Q96QT4 1865 aa18.98■□□□□ 0.63
LINC00643-205ENST00000623219 CDHR2Q9BYE9 1310 aa18.98■□□□□ 0.63
LINC00643-205ENST00000623219 IQCA1LA6NCM1 817 aa18.97■□□□□ 0.63
LINC00643-205ENST00000623219 APLP1P51693 650 aa18.97■□□□□ 0.63
LINC00643-205ENST00000623219 G2E3Q7L622 706 aa18.97■□□□□ 0.63
LINC00643-205ENST00000623219 LARGE2Q8N3Y3 721 aa18.97■□□□□ 0.63
LINC00643-205ENST00000623219 RTFDC1Q9BY42 306 aaPredicted RBP18.97■□□□□ 0.63
LINC00643-205ENST00000623219 SCN9AQ15858 1988 aa18.96■□□□□ 0.63
LINC00643-205ENST00000623219 IGKV5-2P06315 115 aa18.96■□□□□ 0.63
LINC00643-205ENST00000623219 DPP8Q6V1X1 898 aaPredicted RBP18.96■□□□□ 0.63
LINC00643-205ENST00000623219 ZNF646O15015 1829 aaPredicted RBP18.95■□□□□ 0.62
LINC00643-205ENST00000623219 PPIP5K2O43314 1243 aa18.95■□□□□ 0.62
LINC00643-205ENST00000623219 PDE8AO60658 829 aa18.95■□□□□ 0.62
LINC00643-205ENST00000623219 FKBP5Q13451 457 aaPredicted RBP18.95■□□□□ 0.62
LINC00643-205ENST00000623219 GPC2Q8N158 579 aa18.95■□□□□ 0.62
LINC00643-205ENST00000623219 MPNDQ8N594 471 aa18.95■□□□□ 0.62
LINC00643-205ENST00000623219 CELF1Q92879 486 aaKnown RBP18.95■□□□□ 0.62
LINC00643-205ENST00000623219 NEURL1BA8MQ27 555 aa18.94■□□□□ 0.62
LINC00643-205ENST00000623219 CCER2I3L3R5 266 aa18.94■□□□□ 0.62
LINC00643-205ENST00000623219 EIF6P56537 245 aaKnown RBP18.94■□□□□ 0.62
LINC00643-205ENST00000623219 AOC3Q16853 763 aa18.94■□□□□ 0.62
LINC00643-205ENST00000623219 NIM1KQ8IY84 436 aa18.94■□□□□ 0.62
LINC00643-205ENST00000623219 CWF19L2Q2TBE0 894 aaKnown RBP18.93■□□□□ 0.62
LINC00643-205ENST00000623219 CCDC152Q4G0S7 254 aa18.93■□□□□ 0.62
LINC00643-205ENST00000623219 DNAAF4Q8WXU2 420 aa18.93■□□□□ 0.62
LINC00643-205ENST00000623219 CTSWP56202 376 aa18.91■□□□□ 0.62
LINC00643-205ENST00000623219 KIAA2012Q0VF49 1180 aa18.91■□□□□ 0.62
LINC00643-205ENST00000623219 TAF1DQ9H5J8 278 aaPredicted RBP18.91■□□□□ 0.62
LINC00643-205ENST00000623219 HACL1Q9UJ83 578 aa18.91■□□□□ 0.62
LINC00643-205ENST00000623219 RTL9Q8NET4 1388 aa18.91■□□□□ 0.62
LINC00643-205ENST00000623219 RPS8P62241 208 aaKnown RBP18.9■□□□□ 0.62
LINC00643-205ENST00000623219 LINS1Q8NG48 757 aa18.9■□□□□ 0.62
LINC00643-205ENST00000623219 JARID2Q92833 1246 aaPredicted RBP18.9■□□□□ 0.62
LINC00643-205ENST00000623219 E9PSI1 815 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 GCKRQ14397 625 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 CHADLQ6NUI6 762 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 LDHDQ86WU2 507 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 SEC31BQ9NQW1 1179 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 ZNRF3Q9ULT6 936 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 GJA3Q9Y6H8 435 aa18.89■□□□□ 0.61
LINC00643-205ENST00000623219 PCNTO95613 3336 aa18.88■□□□□ 0.61
LINC00643-205ENST00000623219 EPHX2P34913 555 aa18.88■□□□□ 0.61
LINC00643-205ENST00000623219 UBE3BQ7Z3V4 1068 aa18.88■□□□□ 0.61
LINC00643-205ENST00000623219 NSFL1CQ9UNZ2 370 aaKnown RBP18.88■□□□□ 0.61
LINC00643-205ENST00000623219 H7C1W4 665 aa18.87■□□□□ 0.61
LINC00643-205ENST00000623219 POTEIP0CG38 1075 aa18.87■□□□□ 0.61
LINC00643-205ENST00000623219 POTEJP0CG39 1038 aa18.87■□□□□ 0.61
LINC00643-205ENST00000623219 POLR2AP24928 1970 aaKnown RBP18.87■□□□□ 0.61
LINC00643-205ENST00000623219 LMOD1P29536 600 aaPredicted RBP18.87■□□□□ 0.61
LINC00643-205ENST00000623219 GPSM2P81274 684 aa18.87■□□□□ 0.61
LINC00643-205ENST00000623219 CCDC85AQ96PX6 553 aaPredicted RBP18.87■□□□□ 0.61
LINC00643-205ENST00000623219 CDC5LQ99459 802 aaKnown RBP18.87■□□□□ 0.61
LINC00643-205ENST00000623219 PLA2G12BQ9BX93 195 aa18.87■□□□□ 0.61
LINC00643-205ENST00000623219 SCNN1DP51172 638 aa18.86■□□□□ 0.61
LINC00643-205ENST00000623219 WASHC4Q2M389 1173 aa18.86■□□□□ 0.61
LINC00643-205ENST00000623219 PNMA8AQ86V59 439 aaPredicted RBP18.86■□□□□ 0.61
LINC00643-205ENST00000623219 ANKRD18AQ8IVF6 992 aa18.86■□□□□ 0.61
LINC00643-205ENST00000623219 TTLL11Q8NHH1 800 aa18.86■□□□□ 0.61
LINC00643-205ENST00000623219 EYA3Q99504 573 aa18.86■□□□□ 0.61
LINC00643-205ENST00000623219 PODXL2Q9NZ53 605 aa18.86■□□□□ 0.61
LINC00643-205ENST00000623219 CASP7P55210 303 aa18.85■□□□□ 0.61
LINC00643-205ENST00000623219 POLLQ9UGP5 575 aa18.85■□□□□ 0.61
LINC00643-205ENST00000623219 F6X3S4 739 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 C6orf229H3BNL8 230 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 CXCL9Q07325 125 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 SLFN5Q08AF3 891 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 EAPPQ56P03 285 aaPredicted RBP18.84■□□□□ 0.61
LINC00643-205ENST00000623219 BEND3Q5T5X7 828 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 TBC1D16Q8TBP0 767 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 GREM2Q9H772 168 aa18.84■□□□□ 0.61
LINC00643-205ENST00000623219 XDHP47989 1333 aa18.83■□□□□ 0.61
LINC00643-205ENST00000623219 CIAPIN1Q6FI81 312 aa18.83■□□□□ 0.6
LINC00643-205ENST00000623219 ANKIB1Q9P2G1 1089 aa18.83■□□□□ 0.6
LINC00643-205ENST00000623219 ECM29Q5VYK3 1845 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 YDJCA8MPS7 323 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 UFL1O94874 794 aa18.82■□□□□ 0.6
LINC00643-205ENST00000623219 HTRA3P83110 453 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms