RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ANKRD13DQ6ZTN6 518 aa24.62■■□□□ 1.53
CDX1-202ENST00000616154 USP50Q70EL3 339 aaPredicted RBP24.62■■□□□ 1.53
CDX1-202ENST00000616154 ISCA1Q9BUE6 129 aa24.62■■□□□ 1.53
CDX1-202ENST00000616154 ZNRF3Q9ULT6 936 aa24.62■■□□□ 1.53
CDX1-202ENST00000616154 TMC4Q7Z404 712 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 MPNDQ8N594 471 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 DUOX1Q9NRD9 1551 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 RASSF10A6NK89 507 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 KIAA2012Q0VF49 1180 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 DUSP27Q5VZP5 1158 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 MBIPQ9NS73 344 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 HYPKQ9NX55 129 aa24.61■■□□□ 1.53
CDX1-202ENST00000616154 CXCL9Q07325 125 aa24.6■■□□□ 1.53
CDX1-202ENST00000616154 GPRC5DQ9NZD1 345 aa24.6■■□□□ 1.53
CDX1-202ENST00000616154 ZNF853P0CG23 659 aa24.59■■□□□ 1.53
CDX1-202ENST00000616154 CCDC184Q52MB2 194 aa24.59■■□□□ 1.53
CDX1-202ENST00000616154 DEFB115Q30KQ5 88 aa24.58■■□□□ 1.52
CDX1-202ENST00000616154 ADARB2Q9NS39 739 aaKnown RBP24.58■■□□□ 1.52
CDX1-202ENST00000616154 ATP5J2-PTCD1G3V325 749 aa24.57■■□□□ 1.52
CDX1-202ENST00000616154 FOXN1O15353 648 aa24.57■■□□□ 1.52
CDX1-202ENST00000616154 TRIM28Q13263 835 aaKnown RBP24.57■■□□□ 1.52
CDX1-202ENST00000616154 SF3B3Q15393 1217 aaKnown RBP24.57■■□□□ 1.52
CDX1-202ENST00000616154 ZNF428Q96B54 188 aa24.57■■□□□ 1.52
CDX1-202ENST00000616154 FAM89AQ96GI7 184 aa24.57■■□□□ 1.52
CDX1-202ENST00000616154 IFT57Q9NWB7 429 aa24.57■■□□□ 1.52
CDX1-202ENST00000616154 CDHR2Q9BYE9 1310 aa24.57■■□□□ 1.52
CDX1-202ENST00000616154 CIAPIN1Q6FI81 312 aa24.56■■□□□ 1.52
CDX1-202ENST00000616154 ABT1Q9ULW3 272 aaKnown RBP24.56■■□□□ 1.52
CDX1-202ENST00000616154 APAF1O14727 1248 aa24.55■■□□□ 1.52
CDX1-202ENST00000616154 GMPSP49915 693 aaPredicted RBP24.55■■□□□ 1.52
CDX1-202ENST00000616154 CALD1Q05682 793 aaKnown RBP24.55■■□□□ 1.52
CDX1-202ENST00000616154 AIDAQ96BJ3 306 aa24.55■■□□□ 1.52
CDX1-202ENST00000616154 THSD7BQ9C0I4 1608 aa24.55■■□□□ 1.52
CDX1-202ENST00000616154 ANP32CO43423 234 aa24.54■■□□□ 1.52
CDX1-202ENST00000616154 CAPN15O75808 1086 aa24.54■■□□□ 1.52
CDX1-202ENST00000616154 COL4A1P02462 1669 aa24.54■■□□□ 1.52
CDX1-202ENST00000616154 GNAI1P63096 354 aa24.54■■□□□ 1.52
CDX1-202ENST00000616154 TNIP1Q15025 636 aa24.54■■□□□ 1.52
CDX1-202ENST00000616154 WBP1LQ9NX94 342 aa24.54■■□□□ 1.52
CDX1-202ENST00000616154 FMR1Q06787 632 aaKnown RBP eCLIP24.53■■□□□ 1.52
CDX1-202ENST00000616154 CELF1Q92879 486 aaKnown RBP24.53■■□□□ 1.52
CDX1-202ENST00000616154 PRDM10Q9NQV6 1147 aa24.53■■□□□ 1.52
CDX1-202ENST00000616154 WDR33Q9C0J8 1336 aaKnown RBP24.52■■□□□ 1.52
CDX1-202ENST00000616154 RAD17O75943 681 aa24.52■■□□□ 1.52
CDX1-202ENST00000616154 CTCFP49711 727 aaPredicted RBP24.52■■□□□ 1.52
CDX1-202ENST00000616154 GOLGA2Q08379 1002 aa24.52■■□□□ 1.52
CDX1-202ENST00000616154 YDJCA8MPS7 323 aa24.51■■□□□ 1.51
CDX1-202ENST00000616154 TRAF5O00463 557 aa24.51■■□□□ 1.51
CDX1-202ENST00000616154 IRS4O14654 1257 aaPredicted RBP24.51■■□□□ 1.51
CDX1-202ENST00000616154 NCBP3Q53F19 620 aaKnown RBP24.51■■□□□ 1.51
CDX1-202ENST00000616154 RIC3Q7Z5B4 369 aa24.51■■□□□ 1.51
CDX1-202ENST00000616154 BCL2L13Q9BXK5 485 aa24.51■■□□□ 1.51
CDX1-202ENST00000616154 CST9Q5W186 159 aa24.5■■□□□ 1.51
CDX1-202ENST00000616154 RTL5Q5HYW3 569 aaPredicted RBP24.49■■□□□ 1.51
CDX1-202ENST00000616154 ZBTB38Q8NAP3 1195 aaPredicted RBP24.49■■□□□ 1.51
CDX1-202ENST00000616154 PHAXQ9H814 394 aaKnown RBP24.49■■□□□ 1.51
CDX1-202ENST00000616154 PGAP2Q9UHJ9 254 aa24.49■■□□□ 1.51
CDX1-202ENST00000616154 NSFL1CQ9UNZ2 370 aaKnown RBP24.49■■□□□ 1.51
CDX1-202ENST00000616154 WASHC4Q2M389 1173 aa24.48■■□□□ 1.51
CDX1-202ENST00000616154 ZC3H15Q8WU90 426 aaKnown RBP24.48■■□□□ 1.51
CDX1-202ENST00000616154 ELL2O00472 640 aaPredicted RBP24.47■■□□□ 1.51
CDX1-202ENST00000616154 MAP2K1Q02750 393 aaPredicted RBP24.47■■□□□ 1.51
CDX1-202ENST00000616154 CCDC27Q2M243 656 aa24.47■■□□□ 1.51
CDX1-202ENST00000616154 MRS2Q9HD23 443 aa24.47■■□□□ 1.51
CDX1-202ENST00000616154 TLL2Q9Y6L7 1015 aa24.47■■□□□ 1.51
CDX1-202ENST00000616154 HSP90B1P14625 803 aaKnown RBP24.46■■□□□ 1.51
CDX1-202ENST00000616154 ECE1P42892 770 aa24.46■■□□□ 1.51
CDX1-202ENST00000616154 HIRAP54198 1017 aaPredicted RBP24.46■■□□□ 1.51
CDX1-202ENST00000616154 GPSM2P81274 684 aa24.46■■□□□ 1.51
CDX1-202ENST00000616154 DIEXFQ68CQ4 756 aaKnown RBP24.46■■□□□ 1.51
CDX1-202ENST00000616154 C8orf58Q8NAV2 365 aa24.46■■□□□ 1.51
CDX1-202ENST00000616154 CAPNS2Q96L46 248 aa24.46■■□□□ 1.51
CDX1-202ENST00000616154 POLLQ9UGP5 575 aa24.46■■□□□ 1.51
CDX1-202ENST00000616154 CNOT7Q9UIV1 285 aaKnown RBP24.46■■□□□ 1.51
CDX1-202ENST00000616154 RPS8P62241 208 aaKnown RBP24.45■■□□□ 1.5
CDX1-202ENST00000616154 CCDC191Q8NCU4 936 aa24.45■■□□□ 1.5
CDX1-202ENST00000616154 TRPM4Q8TD43 1214 aa24.45■■□□□ 1.5
CDX1-202ENST00000616154 MYD88Q99836 296 aa24.45■■□□□ 1.5
CDX1-202ENST00000616154 CHMP4AQ9BY43 222 aa24.45■■□□□ 1.5
CDX1-202ENST00000616154 GLIS2Q9BZE0 524 aaPredicted RBP24.45■■□□□ 1.5
CDX1-202ENST00000616154 C6orf229H3BNL8 230 aa24.44■■□□□ 1.5
CDX1-202ENST00000616154 H7C1D1 291 aa24.44■■□□□ 1.5
CDX1-202ENST00000616154 PAXIP1Q6ZW49 1069 aaPredicted RBP24.44■■□□□ 1.5
CDX1-202ENST00000616154 DPF2Q92785 391 aa24.44■■□□□ 1.5
CDX1-202ENST00000616154 EYA3Q99504 573 aa24.44■■□□□ 1.5
CDX1-202ENST00000616154 DBNDD1Q9H9R9 158 aa24.44■■□□□ 1.5
CDX1-202ENST00000616154 SHTN1A0MZ66 631 aa24.43■■□□□ 1.5
CDX1-202ENST00000616154 PCCAP05165 728 aaPredicted RBP24.43■■□□□ 1.5
CDX1-202ENST00000616154 LBX1P52954 281 aa24.43■■□□□ 1.5
CDX1-202ENST00000616154 CYP4F22Q6NT55 531 aa24.43■■□□□ 1.5
CDX1-202ENST00000616154 MICALL2Q8IY33 904 aa24.43■■□□□ 1.5
CDX1-202ENST00000616154 TBC1D16Q8TBP0 767 aa24.43■■□□□ 1.5
CDX1-202ENST00000616154 SCN9AQ15858 1988 aa24.43■■□□□ 1.5
CDX1-202ENST00000616154 PSMD14O00487 310 aa24.42■■□□□ 1.5
CDX1-202ENST00000616154 RIMBP2O15034 1052 aa24.42■■□□□ 1.5
CDX1-202ENST00000616154 CELF2O95319 508 aaKnown RBP24.42■■□□□ 1.5
CDX1-202ENST00000616154 DDX58O95786 925 aaKnown RBP24.42■■□□□ 1.5
CDX1-202ENST00000616154 HSPA8P11142 646 aaKnown RBP24.42■■□□□ 1.5
CDX1-202ENST00000616154 CCDC30Q5VVM6 783 aa24.42■■□□□ 1.5
CDX1-202ENST00000616154 METTL22Q9BUU2 404 aaPredicted RBP24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms