RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-215ENST00000607187 PRELPP51888 382 aa12.83□□□□□ -0.36
CTSA-215ENST00000607187 TRIM28Q13263 835 aaKnown RBP12.83□□□□□ -0.36
CTSA-215ENST00000607187 SOGA3Q5TF21 947 aa12.83□□□□□ -0.36
CTSA-215ENST00000607187 RIC3Q7Z5B4 369 aa12.83□□□□□ -0.36
CTSA-215ENST00000607187 STK31Q9BXU1 1019 aa12.83□□□□□ -0.36
CTSA-215ENST00000607187 RNF181Q9P0P0 153 aa12.83□□□□□ -0.36
CTSA-215ENST00000607187 TIAM2Q8IVF5 1701 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 ATP5J2-PTCD1G3V325 749 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 VAMP4O75379 141 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 EXOSC9Q06265 439 aaKnown RBP12.82□□□□□ -0.36
CTSA-215ENST00000607187 C3orf67Q6ZVT6 689 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 SYNE4Q8N205 404 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 RPGRQ92834 1020 aaKnown RBP12.82□□□□□ -0.36
CTSA-215ENST00000607187 NLRP3Q96P20 1036 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 MYH16Q9H6N6 1097 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 GPBP1L1Q9HC44 474 aaPredicted RBP12.82□□□□□ -0.36
CTSA-215ENST00000607187 TRMT112Q9UI30 125 aaKnown RBP12.82□□□□□ -0.36
CTSA-215ENST00000607187 TAF1P21675 1872 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 SH3TC1Q8TE82 1336 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 LTBP3Q9NS15 1303 aa12.82□□□□□ -0.36
CTSA-215ENST00000607187 TCERG1O14776 1098 aaKnown RBP12.81□□□□□ -0.36
CTSA-215ENST00000607187 DDX58O95786 925 aaKnown RBP12.81□□□□□ -0.36
CTSA-215ENST00000607187 ZNF526Q8TF50 670 aaPredicted RBP12.81□□□□□ -0.36
CTSA-215ENST00000607187 CRAMP1Q96RY5 1269 aa12.81□□□□□ -0.36
CTSA-215ENST00000607187 TAOK3Q9H2K8 898 aa12.81□□□□□ -0.36
CTSA-215ENST00000607187 ZC3H4Q9UPT8 1303 aaKnown RBP12.81□□□□□ -0.36
CTSA-215ENST00000607187 HCLS1P14317 486 aaPredicted RBP12.8□□□□□ -0.36
CTSA-215ENST00000607187 CCDC93Q567U6 631 aa12.8□□□□□ -0.36
CTSA-215ENST00000607187 DIEXFQ68CQ4 756 aaKnown RBP12.8□□□□□ -0.36
CTSA-215ENST00000607187 ZNF428Q96B54 188 aa12.8□□□□□ -0.36
CTSA-215ENST00000607187 RBM17Q96I25 401 aaKnown RBP12.8□□□□□ -0.36
CTSA-215ENST00000607187 METTL22Q9BUU2 404 aaPredicted RBP12.8□□□□□ -0.36
CTSA-215ENST00000607187 OLFM4Q6UX06 510 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 KSR2Q6VAB6 950 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 G2E3Q7L622 706 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 RTKN2Q8IZC4 609 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 CCDC191Q8NCU4 936 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 FAM89AQ96GI7 184 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 MYD88Q99836 296 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 MAP3K2Q9Y2U5 619 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 SNED1Q8TER0 1413 aa12.79□□□□□ -0.36
CTSA-215ENST00000607187 MYH3P11055 1940 aa12.78□□□□□ -0.36
CTSA-215ENST00000607187 PI4KAP2A4QPH2 592 aa12.78□□□□□ -0.36
CTSA-215ENST00000607187 PI4KAP1Q8N8J0 262 aa12.78□□□□□ -0.36
CTSA-215ENST00000607187 ZBTB38Q8NAP3 1195 aaPredicted RBP12.78□□□□□ -0.36
CTSA-215ENST00000607187 CEP350Q5VT06 3117 aa12.77□□□□□ -0.37
CTSA-215ENST00000607187 IRS4O14654 1257 aaPredicted RBP12.77□□□□□ -0.37
CTSA-215ENST00000607187 FKBP4Q02790 459 aaKnown RBP eCLIP12.77□□□□□ -0.37
CTSA-215ENST00000607187 FLIIQ13045 1269 aa12.77□□□□□ -0.37
CTSA-215ENST00000607187 CC2D2BQ6DHV5 1058 aa12.77□□□□□ -0.37
CTSA-215ENST00000607187 CWC25Q9NXE8 425 aaPredicted RBP12.77□□□□□ -0.37
CTSA-215ENST00000607187 ABCC4O15439 1325 aa12.77□□□□□ -0.37
CTSA-215ENST00000607187 E9PSI1 815 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 KIF3CO14782 793 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 PPEF1O14829 653 aaPredicted RBP12.76□□□□□ -0.37
CTSA-215ENST00000607187 IGKV5-2P06315 115 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 C1QTNF8P60827 252 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 SF3B3Q15393 1217 aaKnown RBP12.76□□□□□ -0.37
CTSA-215ENST00000607187 GRIPAP1Q4V328 841 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 ZC3H15Q8WU90 426 aaKnown RBP12.76□□□□□ -0.37
CTSA-215ENST00000607187 PSMD1Q99460 953 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 KDM2BQ8NHM5 1336 aa12.76□□□□□ -0.37
CTSA-215ENST00000607187 BBOX1O75936 387 aa12.75□□□□□ -0.37
CTSA-215ENST00000607187 PCCAP05165 728 aaPredicted RBP12.75□□□□□ -0.37
CTSA-215ENST00000607187 SLFN5Q08AF3 891 aa12.75□□□□□ -0.37
CTSA-215ENST00000607187 NEXNQ0ZGT2 675 aa12.75□□□□□ -0.37
CTSA-215ENST00000607187 FKBP5Q13451 457 aaPredicted RBP12.75□□□□□ -0.37
CTSA-215ENST00000607187 RTL5Q5HYW3 569 aaPredicted RBP12.75□□□□□ -0.37
CTSA-215ENST00000607187 DDX46Q7L014 1031 aaKnown RBP12.75□□□□□ -0.37
CTSA-215ENST00000607187 ZNF467Q7Z7K2 595 aaPredicted RBP12.75□□□□□ -0.37
CTSA-215ENST00000607187 NMRK2Q9NPI5 230 aa12.75□□□□□ -0.37
CTSA-215ENST00000607187 ATP6V0A2Q9Y487 856 aa12.75□□□□□ -0.37
CTSA-215ENST00000607187 LRRC37AA6NMS7 1700 aa12.74□□□□□ -0.37
CTSA-215ENST00000607187 GLTPD2A6NH11 291 aa12.74□□□□□ -0.37
CTSA-215ENST00000607187 NEURL1BA8MQ27 555 aa12.74□□□□□ -0.37
CTSA-215ENST00000607187 HSP90B1P14625 803 aaKnown RBP12.74□□□□□ -0.37
CTSA-215ENST00000607187 GRAPQ13588 217 aa12.74□□□□□ -0.37
CTSA-215ENST00000607187 SLC51AQ86UW1 340 aa12.74□□□□□ -0.37
CTSA-215ENST00000607187 GRAPLQ8TC17 118 aaPredicted RBP12.74□□□□□ -0.37
CTSA-215ENST00000607187 ZNF277Q9NRM2 450 aaPredicted RBP12.74□□□□□ -0.37
CTSA-215ENST00000607187 WDR90Q96KV7 1748 aa12.74□□□□□ -0.37
CTSA-215ENST00000607187 CDHR2Q9BYE9 1310 aa12.73□□□□□ -0.37
CTSA-215ENST00000607187 IARSP41252 1262 aaKnown RBP12.73□□□□□ -0.37
CTSA-215ENST00000607187 CWF19L2Q2TBE0 894 aaKnown RBP12.73□□□□□ -0.37
CTSA-215ENST00000607187 SP8Q8IXZ3 490 aa12.73□□□□□ -0.37
CTSA-215ENST00000607187 REM2Q8IYK8 340 aaPredicted RBP12.73□□□□□ -0.37
CTSA-215ENST00000607187 TRMT2AQ8IZ69 625 aaKnown RBP12.73□□□□□ -0.37
CTSA-215ENST00000607187 DNAAF4Q8WXU2 420 aa12.73□□□□□ -0.37
CTSA-215ENST00000607187 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
CTSA-215ENST00000607187 CDCA7LQ96GN5 454 aa12.73□□□□□ -0.37
CTSA-215ENST00000607187 COL4A1P02462 1669 aa12.73□□□□□ -0.37
CTSA-215ENST00000607187 PDE8AO60658 829 aa12.72□□□□□ -0.37
CTSA-215ENST00000607187 PDAP1Q13442 181 aaKnown RBP12.72□□□□□ -0.37
CTSA-215ENST00000607187 DPY19L2Q6NUT2 758 aa12.72□□□□□ -0.37
CTSA-215ENST00000607187 TMC4Q7Z404 712 aa12.72□□□□□ -0.37
CTSA-215ENST00000607187 POTEDQ86YR6 584 aa12.72□□□□□ -0.37
CTSA-215ENST00000607187 TMX4Q9H1E5 349 aaPredicted RBP12.72□□□□□ -0.37
CTSA-215ENST00000607187 H7C1W4 665 aa12.71□□□□□ -0.37
CTSA-215ENST00000607187 GCKRQ14397 625 aa12.71□□□□□ -0.37
CTSA-215ENST00000607187 LINS1Q8NG48 757 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms