RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 ANKRD13DQ6ZTN6 518 aa23.2■■□□□ 1.3
SHKBP1-227ENST00000602011 PLBD2Q8NHP8 589 aa23.2■■□□□ 1.3
SHKBP1-227ENST00000602011 CFAP44Q96MT7 982 aa23.2■■□□□ 1.3
SHKBP1-227ENST00000602011 ADARB2Q9NS39 739 aaKnown RBP23.2■■□□□ 1.3
SHKBP1-227ENST00000602011 TRIM35Q9UPQ4 493 aa23.2■■□□□ 1.3
SHKBP1-227ENST00000602011 CDHR2Q9BYE9 1310 aa23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 MAP2K1Q02750 393 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 GRAPQ13588 217 aa23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 TNIP1Q15025 636 aa23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 HDGFL1Q5TGJ6 251 aa23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 CST9Q5W186 159 aa23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 GRAPLQ8TC17 118 aaPredicted RBP23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 HYPKQ9NX55 129 aa23.19■■□□□ 1.3
SHKBP1-227ENST00000602011 HSP90B1P14625 803 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-227ENST00000602011 KIAA2012Q0VF49 1180 aa23.18■■□□□ 1.3
SHKBP1-227ENST00000602011 CAPNS2Q96L46 248 aa23.18■■□□□ 1.3
SHKBP1-227ENST00000602011 GPRC5DQ9NZD1 345 aa23.18■■□□□ 1.3
SHKBP1-227ENST00000602011 LAS1LQ9Y4W2 734 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-227ENST00000602011 HCLS1P14317 486 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 CALD1Q05682 793 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 CXCL9Q07325 125 aa23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 TRIM28Q13263 835 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 CCDC146Q8IYE0 955 aa23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 NECTIN2Q92692 538 aa23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 ZNF428Q96B54 188 aa23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 ADAMTS8Q9UP79 889 aa23.17■■□□□ 1.3
SHKBP1-227ENST00000602011 ECE1P42892 770 aa23.16■■□□□ 1.3
SHKBP1-227ENST00000602011 ZC3H15Q8WU90 426 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-227ENST00000602011 ABHD8Q96I13 439 aa23.16■■□□□ 1.3
SHKBP1-227ENST00000602011 CHPF2Q9P2E5 772 aa23.16■■□□□ 1.3
SHKBP1-227ENST00000602011 TSKSQ9UJT2 592 aa23.16■■□□□ 1.3
SHKBP1-227ENST00000602011 SF3B3Q15393 1217 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-227ENST00000602011 CIAPIN1Q6FI81 312 aa23.15■■□□□ 1.3
SHKBP1-227ENST00000602011 ISCA1Q9BUE6 129 aa23.15■■□□□ 1.3
SHKBP1-227ENST00000602011 AOC2O75106 756 aa23.14■■□□□ 1.29
SHKBP1-227ENST00000602011 GPR101Q96P66 508 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-227ENST00000602011 PGAP2Q9UHJ9 254 aa23.14■■□□□ 1.29
SHKBP1-227ENST00000602011 TRPM7Q96QT4 1865 aa23.13■■□□□ 1.29
SHKBP1-227ENST00000602011 GMPSP49915 693 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-227ENST00000602011 THSD7BQ9C0I4 1608 aa23.12■■□□□ 1.29
SHKBP1-227ENST00000602011 DUSP27Q5VZP5 1158 aa23.12■■□□□ 1.29
SHKBP1-227ENST00000602011 BCL2L13Q9BXK5 485 aa23.12■■□□□ 1.29
SHKBP1-227ENST00000602011 GLIS2Q9BZE0 524 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-227ENST00000602011 TLL2Q9Y6L7 1015 aa23.12■■□□□ 1.29
SHKBP1-227ENST00000602011 KRT24Q2M2I5 525 aa23.11■■□□□ 1.29
SHKBP1-227ENST00000602011 LAMB2P55268 1798 aa23.11■■□□□ 1.29
SHKBP1-227ENST00000602011 SHTN1A0MZ66 631 aa23.1■■□□□ 1.29
SHKBP1-227ENST00000602011 RAD17O75943 681 aa23.1■■□□□ 1.29
SHKBP1-227ENST00000602011 GNAI1P63096 354 aa23.1■■□□□ 1.29
SHKBP1-227ENST00000602011 TAF1P21675 1872 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 H7C1D1 291 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 CELF2O95319 508 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 ZNF853P0CG23 659 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 WASHC4Q2M389 1173 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 DPF2Q92785 391 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 HHIPL1Q96JK4 782 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 BEGAINQ9BUH8 593 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 IFT57Q9NWB7 429 aa23.09■■□□□ 1.29
SHKBP1-227ENST00000602011 MAP2K2P36507 400 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 HIRAP54198 1017 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 GOLGA2Q08379 1002 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 FAM161AQ3B820 660 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 TRPM4Q8TD43 1214 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 FAM89AQ96GI7 184 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 EYA3Q99504 573 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 PRKRIP1Q9H875 184 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 ZNF408Q9H9D4 720 aa23.08■■□□□ 1.29
SHKBP1-227ENST00000602011 DLK2Q6UY11 383 aa23.07■■□□□ 1.28
SHKBP1-227ENST00000602011 CDC37L1Q7L3B6 337 aa23.07■■□□□ 1.28
SHKBP1-227ENST00000602011 RIC3Q7Z5B4 369 aa23.07■■□□□ 1.28
SHKBP1-227ENST00000602011 MBIPQ9NS73 344 aa23.07■■□□□ 1.28
SHKBP1-227ENST00000602011 NSFL1CQ9UNZ2 370 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-227ENST00000602011 ANKRD36CQ5JPF3 1778 aa23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 YDJCA8MPS7 323 aa23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 IRS4O14654 1257 aaPredicted RBP23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 RPS8P62241 208 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 SAPCD2Q86UD0 394 aa23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 ZBTB38Q8NAP3 1195 aaPredicted RBP23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 CNOT7Q9UIV1 285 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-227ENST00000602011 CCDC85CA6NKD9 419 aa23.05■■□□□ 1.28
SHKBP1-227ENST00000602011 ATP5J2-PTCD1G3V325 749 aa23.05■■□□□ 1.28
SHKBP1-227ENST00000602011 RPS12P25398 132 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-227ENST00000602011 CCDC191Q8NCU4 936 aa23.04■■□□□ 1.28
SHKBP1-227ENST00000602011 DUOX1Q9NRD9 1551 aa23.03■■□□□ 1.28
SHKBP1-227ENST00000602011 C6orf229H3BNL8 230 aa23.03■■□□□ 1.28
SHKBP1-227ENST00000602011 CA12O43570 354 aa23.03■■□□□ 1.28
SHKBP1-227ENST00000602011 DDX58O95786 925 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-227ENST00000602011 CELF1Q92879 486 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-227ENST00000602011 APAF1O14727 1248 aa23.02■■□□□ 1.28
SHKBP1-227ENST00000602011 ZIC5Q96T25 663 aa23.02■■□□□ 1.28
SHKBP1-227ENST00000602011 ZC3H12CQ9C0D7 883 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-227ENST00000602011 PODXL2Q9NZ53 605 aa23.02■■□□□ 1.28
SHKBP1-227ENST00000602011 ZBTB12Q9Y330 459 aaPredicted RBP23.02■■□□□ 1.28
SHKBP1-227ENST00000602011 CCDC30Q5VVM6 783 aa23.01■■□□□ 1.27
SHKBP1-227ENST00000602011 COL4A1P02462 1669 aa23■■□□□ 1.27
SHKBP1-227ENST00000602011 CCDC152Q4G0S7 254 aa23■■□□□ 1.27
SHKBP1-227ENST00000602011 USP48Q86UV5 1035 aa23■■□□□ 1.27
SHKBP1-227ENST00000602011 MICALL2Q8IY33 904 aa23■■□□□ 1.27
SHKBP1-227ENST00000602011 POLLQ9UGP5 575 aa23■■□□□ 1.27
SHKBP1-227ENST00000602011 PCCAP05165 728 aaPredicted RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms