RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 VEGFBP49765 207 aa22.8■■□□□ 1.24
SHKBP1-223ENST00000600552 RIC3Q7Z5B4 369 aa22.8■■□□□ 1.24
SHKBP1-223ENST00000600552 ZNRF3Q9ULT6 936 aa22.8■■□□□ 1.24
SHKBP1-223ENST00000600552 ABT1Q9ULW3 272 aaKnown RBP22.8■■□□□ 1.24
SHKBP1-223ENST00000600552 CNTNAP1P78357 1384 aa22.79■■□□□ 1.24
SHKBP1-223ENST00000600552 RAD17O75943 681 aa22.79■■□□□ 1.24
SHKBP1-223ENST00000600552 FMR1Q06787 632 aaKnown RBP eCLIP22.79■■□□□ 1.24
SHKBP1-223ENST00000600552 CXCL9Q07325 125 aa22.79■■□□□ 1.24
SHKBP1-223ENST00000600552 ISCA1Q9BUE6 129 aa22.79■■□□□ 1.24
SHKBP1-223ENST00000600552 GNAI1P63096 354 aa22.78■■□□□ 1.24
SHKBP1-223ENST00000600552 BCL2L13Q9BXK5 485 aa22.78■■□□□ 1.24
SHKBP1-223ENST00000600552 PHAXQ9H814 394 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-223ENST00000600552 PCNTO95613 3336 aa22.78■■□□□ 1.24
SHKBP1-223ENST00000600552 LTBP1Q14766 1721 aa22.77■■□□□ 1.24
SHKBP1-223ENST00000600552 GMPSP49915 693 aaPredicted RBP22.77■■□□□ 1.24
SHKBP1-223ENST00000600552 GOLGA2Q08379 1002 aa22.77■■□□□ 1.24
SHKBP1-223ENST00000600552 PAXIP1Q6ZW49 1069 aaPredicted RBP22.77■■□□□ 1.24
SHKBP1-223ENST00000600552 RIMBP2O15034 1052 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 CALD1Q05682 793 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 GRM1Q13255 1194 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 DEFB115Q30KQ5 88 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 CIAPIN1Q6FI81 312 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 CELF1Q92879 486 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 RTFDC1Q9BY42 306 aaPredicted RBP22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 VPS33BQ9H267 617 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 IFT57Q9NWB7 429 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 NSFL1CQ9UNZ2 370 aaKnown RBP22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 ADAMTSL1Q8N6G6 1762 aa22.76■■□□□ 1.23
SHKBP1-223ENST00000600552 TRAF5O00463 557 aa22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 IRS4O14654 1257 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 ZNF853P0CG23 659 aa22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 USP50Q70EL3 339 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 JARID2Q92833 1246 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 MYD88Q99836 296 aa22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 GPRC5DQ9NZD1 345 aa22.75■■□□□ 1.23
SHKBP1-223ENST00000600552 C6orf229H3BNL8 230 aa22.74■■□□□ 1.23
SHKBP1-223ENST00000600552 KIAA2012Q0VF49 1180 aa22.74■■□□□ 1.23
SHKBP1-223ENST00000600552 C8orf58Q8NAV2 365 aa22.74■■□□□ 1.23
SHKBP1-223ENST00000600552 AIDAQ96BJ3 306 aa22.74■■□□□ 1.23
SHKBP1-223ENST00000600552 ADARB2Q9NS39 739 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-223ENST00000600552 FOXN1O15353 648 aa22.73■■□□□ 1.23
SHKBP1-223ENST00000600552 TNIP1Q15025 636 aa22.73■■□□□ 1.23
SHKBP1-223ENST00000600552 DDX60Q8IY21 1712 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-223ENST00000600552 TMC4Q7Z404 712 aa22.72■■□□□ 1.23
SHKBP1-223ENST00000600552 CCDC85AQ96PX6 553 aaPredicted RBP22.72■■□□□ 1.23
SHKBP1-223ENST00000600552 GPSM2P81274 684 aa22.71■■□□□ 1.23
SHKBP1-223ENST00000600552 SF3B3Q15393 1217 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-223ENST00000600552 WASHC4Q2M389 1173 aa22.71■■□□□ 1.23
SHKBP1-223ENST00000600552 CCDC184Q52MB2 194 aa22.71■■□□□ 1.23
SHKBP1-223ENST00000600552 GPR101Q96P66 508 aaPredicted RBP22.71■■□□□ 1.23
SHKBP1-223ENST00000600552 DBNDD1Q9H9R9 158 aa22.71■■□□□ 1.23
SHKBP1-223ENST00000600552 YDJCA8MPS7 323 aa22.7■■□□□ 1.22
SHKBP1-223ENST00000600552 WDR33Q9C0J8 1336 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 SHTN1A0MZ66 631 aa22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 DOK7Q18PE1 504 aa22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 TSR2Q969E8 191 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 ZNF408Q9H9D4 720 aa22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 SEC31BQ9NQW1 1179 aa22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 ZBTB12Q9Y330 459 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-223ENST00000600552 RASSF10A6NK89 507 aa22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 RPS8P62241 208 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 TRIM28Q13263 835 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 CCDC30Q5VVM6 783 aa22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 TSPYL6Q8N831 410 aa22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 ZBTB38Q8NAP3 1195 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 GLIS2Q9BZE0 524 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 POLLQ9UGP5 575 aa22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 CNOT7Q9UIV1 285 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-223ENST00000600552 G3V3G9 751 aa22.67■■□□□ 1.22
SHKBP1-223ENST00000600552 DCAF8Q5TAQ9 597 aa22.67■■□□□ 1.22
SHKBP1-223ENST00000600552 H7C1D1 291 aa22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 DDX58O95786 925 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 CTCFP49711 727 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 RBM26Q5T8P6 1007 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 CST9Q5W186 159 aa22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 CYP4F22Q6NT55 531 aa22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 TRPM4Q8TD43 1214 aa22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 CWC25Q9NXE8 425 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 ANKIB1Q9P2G1 1089 aa22.66■■□□□ 1.22
SHKBP1-223ENST00000600552 COL4A1P02462 1669 aa22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 PSMD14O00487 310 aa22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 CELF2O95319 508 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 HIRAP54198 1017 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 MICALL2Q8IY33 904 aa22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 EYA3Q99504 573 aa22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 KCNQ5Q9NR82 932 aa22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 MAP3K2Q9Y2U5 619 aa22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 SALL2Q9Y467 1007 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-223ENST00000600552 DUOX1Q9NRD9 1551 aa22.64■■□□□ 1.22
SHKBP1-223ENST00000600552 ECE2O60344 883 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 HSP90B1P14625 803 aaKnown RBP22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 LBX1P52954 281 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 CCDC191Q8NCU4 936 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 TBC1D16Q8TBP0 767 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 CAPNS2Q96L46 248 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 METTL22Q9BUU2 404 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 WBP1LQ9NX94 342 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 TRPM7Q96QT4 1865 aa22.64■■□□□ 1.21
SHKBP1-223ENST00000600552 UFL1O94874 794 aa22.63■■□□□ 1.21
SHKBP1-223ENST00000600552 PCCAP05165 728 aaPredicted RBP22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms