RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
VRK3-216ENST00000599342 CCDC30Q5VVM6 783 aa12.65□□□□□ -0.38
VRK3-216ENST00000599342 MAP1SQ66K74 1059 aaPredicted RBP12.65□□□□□ -0.38
VRK3-216ENST00000599342 CNTROBQ8N137 903 aa12.65□□□□□ -0.38
VRK3-216ENST00000599342 PHAXQ9H814 394 aaKnown RBP12.65□□□□□ -0.38
VRK3-216ENST00000599342 MKRN1Q9UHC7 482 aaKnown RBP12.65□□□□□ -0.38
VRK3-216ENST00000599342 ZNRF3Q9ULT6 936 aa12.65□□□□□ -0.38
VRK3-216ENST00000599342 ADAMTSL1Q8N6G6 1762 aa12.64□□□□□ -0.39
VRK3-216ENST00000599342 TMEM88BA6NKF7 163 aa12.64□□□□□ -0.39
VRK3-216ENST00000599342 IRS4O14654 1257 aaPredicted RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 DDX58O95786 925 aaKnown RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 HSPA1AP0DMV8 641 aaKnown RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 HSPA1BP0DMV9 641 aaKnown RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 KIAA2012Q0VF49 1180 aa12.64□□□□□ -0.39
VRK3-216ENST00000599342 TRIM28Q13263 835 aaKnown RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 SF3B3Q15393 1217 aaKnown RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 C8orf58Q8NAV2 365 aa12.64□□□□□ -0.39
VRK3-216ENST00000599342 MYD88Q99836 296 aa12.64□□□□□ -0.39
VRK3-216ENST00000599342 DDX60Q8IY21 1712 aaKnown RBP12.64□□□□□ -0.39
VRK3-216ENST00000599342 ANP32CO43423 234 aa12.63□□□□□ -0.39
VRK3-216ENST00000599342 ITGBL1O95965 494 aaPredicted RBP12.63□□□□□ -0.39
VRK3-216ENST00000599342 EPS15P42566 896 aa12.63□□□□□ -0.39
VRK3-216ENST00000599342 USP50Q70EL3 339 aaPredicted RBP12.63□□□□□ -0.39
VRK3-216ENST00000599342 ZBTB38Q8NAP3 1195 aaPredicted RBP12.63□□□□□ -0.39
VRK3-216ENST00000599342 CNTNAP1P78357 1384 aa12.63□□□□□ -0.39
VRK3-216ENST00000599342 LTBP1Q14766 1721 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 CXCL9Q07325 125 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 CCDC27Q2M243 656 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 CCDC184Q52MB2 194 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 CIAPIN1Q6FI81 312 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 CCDC191Q8NCU4 936 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 CELF1Q92879 486 aaKnown RBP12.62□□□□□ -0.39
VRK3-216ENST00000599342 TSR2Q969E8 191 aaKnown RBP12.62□□□□□ -0.39
VRK3-216ENST00000599342 BCL2L13Q9BXK5 485 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 STK31Q9BXU1 1019 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 MRS2Q9HD23 443 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 GPRC5DQ9NZD1 345 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 NSFL1CQ9UNZ2 370 aaKnown RBP12.62□□□□□ -0.39
VRK3-216ENST00000599342 LRRC37AA6NMS7 1700 aa12.62□□□□□ -0.39
VRK3-216ENST00000599342 TNIP1Q15025 636 aa12.61□□□□□ -0.39
VRK3-216ENST00000599342 WASHC4Q2M389 1173 aa12.61□□□□□ -0.39
VRK3-216ENST00000599342 TSPYL6Q8N831 410 aa12.61□□□□□ -0.39
VRK3-216ENST00000599342 ADARB2Q9NS39 739 aaKnown RBP12.61□□□□□ -0.39
VRK3-216ENST00000599342 CWC25Q9NXE8 425 aaPredicted RBP12.61□□□□□ -0.39
VRK3-216ENST00000599342 CDHR2Q9BYE9 1310 aa12.61□□□□□ -0.39
VRK3-216ENST00000599342 DUOX1Q9NRD9 1551 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 C6orf229H3BNL8 230 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 RAD17O75943 681 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 PCCAP05165 728 aaPredicted RBP12.6□□□□□ -0.39
VRK3-216ENST00000599342 GMPSP49915 693 aaPredicted RBP12.6□□□□□ -0.39
VRK3-216ENST00000599342 CCDC152Q4G0S7 254 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 COL13A1Q5TAT6 717 aaPredicted RBP12.6□□□□□ -0.39
VRK3-216ENST00000599342 WWC1Q8IX03 1113 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 EYA3Q99504 573 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 METTL22Q9BUU2 404 aaPredicted RBP12.6□□□□□ -0.39
VRK3-216ENST00000599342 ABT1Q9ULW3 272 aaKnown RBP12.6□□□□□ -0.39
VRK3-216ENST00000599342 MAP3K2Q9Y2U5 619 aa12.6□□□□□ -0.39
VRK3-216ENST00000599342 TAF1P21675 1872 aa12.59□□□□□ -0.39
VRK3-216ENST00000599342 ZNF316A6NFI3 1004 aaPredicted RBP12.59□□□□□ -0.39
VRK3-216ENST00000599342 PDE8AO60658 829 aa12.59□□□□□ -0.39
VRK3-216ENST00000599342 RPS8P62241 208 aaKnown RBP12.59□□□□□ -0.39
VRK3-216ENST00000599342 GPSM2P81274 684 aa12.59□□□□□ -0.39
VRK3-216ENST00000599342 NEXNQ0ZGT2 675 aa12.59□□□□□ -0.39
VRK3-216ENST00000599342 TWISTNBQ3B726 338 aaPredicted RBP12.59□□□□□ -0.39
VRK3-216ENST00000599342 YDJCA8MPS7 323 aa12.58□□□□□ -0.4
VRK3-216ENST00000599342 RIMBP2O15034 1052 aa12.58□□□□□ -0.4
VRK3-216ENST00000599342 VEGFBP49765 207 aa12.58□□□□□ -0.4
VRK3-216ENST00000599342 KSR2Q6VAB6 950 aa12.58□□□□□ -0.4
VRK3-216ENST00000599342 DBNDD1Q9H9R9 158 aa12.58□□□□□ -0.4
VRK3-216ENST00000599342 IL16Q14005 1332 aa12.58□□□□□ -0.4
VRK3-216ENST00000599342 PI4KAP2A4QPH2 592 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 RASSF10A6NK89 507 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 H7C1D1 291 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 DEFB115Q30KQ5 88 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 NCBP3Q53F19 620 aaKnown RBP12.57□□□□□ -0.4
VRK3-216ENST00000599342 TNS4Q8IZW8 715 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 PI4KAP1Q8N8J0 262 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 AIDAQ96BJ3 306 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 CCDC85AQ96PX6 553 aaPredicted RBP12.57□□□□□ -0.4
VRK3-216ENST00000599342 SEC31BQ9NQW1 1179 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 ANKIB1Q9P2G1 1089 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 POLLQ9UGP5 575 aa12.57□□□□□ -0.4
VRK3-216ENST00000599342 G3V3G9 751 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 PSMD14O00487 310 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 ECE2O60344 883 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 UFL1O94874 794 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 DCAF8Q5TAQ9 597 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 PAXIP1Q6ZW49 1069 aaPredicted RBP12.56□□□□□ -0.4
VRK3-216ENST00000599342 ANKRD18AQ8IVF6 992 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 MICALL2Q8IY33 904 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 TBC1D16Q8TBP0 767 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 JARID2Q92833 1246 aaPredicted RBP12.56□□□□□ -0.4
VRK3-216ENST00000599342 CDC5LQ99459 802 aaKnown RBP12.56□□□□□ -0.4
VRK3-216ENST00000599342 ZC3H12CQ9C0D7 883 aaKnown RBP12.56□□□□□ -0.4
VRK3-216ENST00000599342 PODXL2Q9NZ53 605 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 CNOT7Q9UIV1 285 aaKnown RBP12.56□□□□□ -0.4
VRK3-216ENST00000599342 GGA1Q9UJY5 639 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 COL4A1P02462 1669 aa12.56□□□□□ -0.4
VRK3-216ENST00000599342 PCNTO95613 3336 aa12.55□□□□□ -0.4
VRK3-216ENST00000599342 TRAF5O00463 557 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms