RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 BEND3Q5T5X7 828 aa17.62■□□□□ 0.41
UPF1-205ENST00000598209 UBE3BQ7Z3V4 1068 aa17.62■□□□□ 0.41
UPF1-205ENST00000598209 SLC51AQ86UW1 340 aa17.62■□□□□ 0.41
UPF1-205ENST00000598209 GRAPLQ8TC17 118 aaPredicted RBP17.62■□□□□ 0.41
UPF1-205ENST00000598209 SNED1Q8TER0 1413 aa17.62■□□□□ 0.41
UPF1-205ENST00000598209 H7C1W4 665 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 BBOX1O75936 387 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 SLC4A10Q6U841 1118 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 SMC4Q9NTJ3 1288 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 ATP6V0A2Q9Y487 856 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 COL4A1P02462 1669 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 LRRC37AA6NMS7 1700 aa17.61■□□□□ 0.41
UPF1-205ENST00000598209 CCDC152Q4G0S7 254 aa17.6■□□□□ 0.41
UPF1-205ENST00000598209 GRIPAP1Q4V328 841 aa17.6■□□□□ 0.41
UPF1-205ENST00000598209 TMX4Q9H1E5 349 aaPredicted RBP17.6■□□□□ 0.41
UPF1-205ENST00000598209 GPBP1L1Q9HC44 474 aaPredicted RBP17.6■□□□□ 0.41
UPF1-205ENST00000598209 PTPRCP08575 1304 aa17.6■□□□□ 0.41
UPF1-205ENST00000598209 ZBED9Q6R2W3 1325 aa17.6■□□□□ 0.41
UPF1-205ENST00000598209 ZC3H4Q9UPT8 1303 aaKnown RBP17.6■□□□□ 0.41
UPF1-205ENST00000598209 SPEF2Q9C093 1822 aa17.59■□□□□ 0.41
UPF1-205ENST00000598209 CTSWP56202 376 aa17.59■□□□□ 0.41
UPF1-205ENST00000598209 SP8Q8IXZ3 490 aa17.59■□□□□ 0.41
UPF1-205ENST00000598209 CELF1Q92879 486 aaKnown RBP17.59■□□□□ 0.41
UPF1-205ENST00000598209 PSMD1Q99460 953 aa17.59■□□□□ 0.41
UPF1-205ENST00000598209 ZNF277Q9NRM2 450 aaPredicted RBP17.59■□□□□ 0.41
UPF1-205ENST00000598209 CASP7P55210 303 aa17.58■□□□□ 0.4
UPF1-205ENST00000598209 TMC4Q7Z404 712 aa17.58■□□□□ 0.4
UPF1-205ENST00000598209 CCDC85AQ96PX6 553 aaPredicted RBP17.58■□□□□ 0.4
UPF1-205ENST00000598209 SEC31BQ9NQW1 1179 aa17.58■□□□□ 0.4
UPF1-205ENST00000598209 ALDH1L1O75891 902 aa17.57■□□□□ 0.4
UPF1-205ENST00000598209 RARSP54136 660 aaKnown RBP17.57■□□□□ 0.4
UPF1-205ENST00000598209 SRCIN1Q9C0H9 1055 aa17.57■□□□□ 0.4
UPF1-205ENST00000598209 IARSP41252 1262 aaKnown RBP17.56■□□□□ 0.4
UPF1-205ENST00000598209 RPS8P62241 208 aaKnown RBP17.56■□□□□ 0.4
UPF1-205ENST00000598209 TTLL11Q8NHH1 800 aa17.56■□□□□ 0.4
UPF1-205ENST00000598209 PLA2G12BQ9BX93 195 aa17.56■□□□□ 0.4
UPF1-205ENST00000598209 KDM2BQ8NHM5 1336 aa17.55■□□□□ 0.4
UPF1-205ENST00000598209 GRM8O00222 908 aa17.55■□□□□ 0.4
UPF1-205ENST00000598209 BRPF1P55201 1214 aaPredicted RBP17.55■□□□□ 0.4
UPF1-205ENST00000598209 MPNDQ8N594 471 aa17.55■□□□□ 0.4
UPF1-205ENST00000598209 DPP8Q6V1X1 898 aaPredicted RBP17.54■□□□□ 0.4
UPF1-205ENST00000598209 GREM2Q9H772 168 aa17.54■□□□□ 0.4
UPF1-205ENST00000598209 C9orf78Q9NZ63 289 aaPredicted RBP17.54■□□□□ 0.4
UPF1-205ENST00000598209 NOB1Q9ULX3 412 aaKnown RBP17.54■□□□□ 0.4
UPF1-205ENST00000598209 RTL9Q8NET4 1388 aa17.53■□□□□ 0.4
UPF1-205ENST00000598209 LTBP1Q14766 1721 aa17.53■□□□□ 0.4
UPF1-205ENST00000598209 GLTPD2A6NH11 291 aa17.53■□□□□ 0.4
UPF1-205ENST00000598209 SUPT20HQ8NEM7 779 aa17.53■□□□□ 0.4
UPF1-205ENST00000598209 CDC5LQ99459 802 aaKnown RBP17.53■□□□□ 0.4
UPF1-205ENST00000598209 RTFDC1Q9BY42 306 aaPredicted RBP17.53■□□□□ 0.4
UPF1-205ENST00000598209 NMRK2Q9NPI5 230 aa17.53■□□□□ 0.4
UPF1-205ENST00000598209 DUOX1Q9NRD9 1551 aa17.53■□□□□ 0.4
UPF1-205ENST00000598209 COL4A5P29400 1685 aa17.52■□□□□ 0.4
UPF1-205ENST00000598209 DPY19L2Q6NUT2 758 aa17.52■□□□□ 0.4
UPF1-205ENST00000598209 ANKRD18AQ8IVF6 992 aa17.52■□□□□ 0.4
UPF1-205ENST00000598209 KIF16BQ96L93 1317 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 CSF1RP07333 972 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 FOXO4P98177 505 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 FAM161AQ3B820 660 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 LARGE2Q8N3Y3 721 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 JDP2Q8WYK2 163 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 WDR90Q96KV7 1748 aa17.51■□□□□ 0.39
UPF1-205ENST00000598209 API5Q9BZZ5 524 aaKnown RBP17.51■□□□□ 0.39
UPF1-205ENST00000598209 NSFL1CQ9UNZ2 370 aaKnown RBP17.51■□□□□ 0.39
UPF1-205ENST00000598209 KIF3CO14782 793 aa17.5■□□□□ 0.39
UPF1-205ENST00000598209 PPIP5K2O43314 1243 aa17.5■□□□□ 0.39
UPF1-205ENST00000598209 ITGA6P23229 1130 aa17.5■□□□□ 0.39
UPF1-205ENST00000598209 GPSM2P81274 684 aa17.5■□□□□ 0.39
UPF1-205ENST00000598209 AOC3Q16853 763 aa17.5■□□□□ 0.39
UPF1-205ENST00000598209 VPS33BQ9H267 617 aa17.5■□□□□ 0.39
UPF1-205ENST00000598209 UTYO14607 1347 aa17.49■□□□□ 0.39
UPF1-205ENST00000598209 FZD9O00144 591 aa17.49■□□□□ 0.39
UPF1-205ENST00000598209 BCAR3O75815 825 aa17.49■□□□□ 0.39
UPF1-205ENST00000598209 NBPF7P0C2Y1 421 aaPredicted RBP17.49■□□□□ 0.39
UPF1-205ENST00000598209 EPHA10Q5JZY3 1008 aa17.49■□□□□ 0.39
UPF1-205ENST00000598209 RRAGCQ9HB90 399 aa17.49■□□□□ 0.39
UPF1-205ENST00000598209 ZNF541Q9H0D2 1346 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 DDNO94850 711 aaPredicted RBP17.48■□□□□ 0.39
UPF1-205ENST00000598209 LMBR1LQ6UX01 489 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 NIM1KQ8IY84 436 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 ARHGAP45Q92619 1136 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 SUCLG2Q96I99 432 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 POLLQ9UGP5 575 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 CHMP3Q9Y3E7 222 aa17.48■□□□□ 0.39
UPF1-205ENST00000598209 ANKRD18BA2A2Z9 1011 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 C6orf229H3BNL8 230 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 IGHMBP2P38935 993 aaKnown RBP17.47■□□□□ 0.39
UPF1-205ENST00000598209 CCT4P50991 539 aaKnown RBP17.47■□□□□ 0.39
UPF1-205ENST00000598209 KIAA2012Q0VF49 1180 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 USP44Q9H0E7 712 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 BSDC1Q9NW68 430 aaPredicted RBP17.47■□□□□ 0.39
UPF1-205ENST00000598209 PODXL2Q9NZ53 605 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 ANKIB1Q9P2G1 1089 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 SCN4AP35499 1836 aa17.47■□□□□ 0.39
UPF1-205ENST00000598209 A0A1B0GUL6 1792 aa17.46■□□□□ 0.39
UPF1-205ENST00000598209 IPO8O15397 1037 aaKnown RBP17.46■□□□□ 0.39
UPF1-205ENST00000598209 EIF6P56537 245 aaKnown RBP17.46■□□□□ 0.39
UPF1-205ENST00000598209 IFIT5Q13325 482 aaKnown RBP17.46■□□□□ 0.39
UPF1-205ENST00000598209 TBC1D16Q8TBP0 767 aa17.46■□□□□ 0.39
UPF1-205ENST00000598209 KAZALD1Q96I82 304 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms