RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 ZNF277Q9NRM2 450 aaPredicted RBP14.04□□□□□ -0.16
SHKBP1-206ENST00000595523 KIF3CO14782 793 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 CC2D2BQ6DHV5 1058 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 DDX46Q7L014 1031 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 MRPL50Q8N5N7 158 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 LINS1Q8NG48 757 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 SSH1Q8WYL5 1049 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 CELF1Q92879 486 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 PSMD1Q99460 953 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 NMRK2Q9NPI5 230 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 ATP6V0A2Q9Y487 856 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 A0A1B0GUL6 1792 aa14.03□□□□□ -0.16
SHKBP1-206ENST00000595523 H7C1W4 665 aa14.02□□□□□ -0.17
SHKBP1-206ENST00000595523 BBOX1O75936 387 aa14.02□□□□□ -0.17
SHKBP1-206ENST00000595523 CASP7P55210 303 aa14.02□□□□□ -0.17
SHKBP1-206ENST00000595523 GCKRQ14397 625 aa14.02□□□□□ -0.17
SHKBP1-206ENST00000595523 BEND3Q5T5X7 828 aa14.02□□□□□ -0.17
SHKBP1-206ENST00000595523 CEP350Q5VT06 3117 aa14.02□□□□□ -0.17
SHKBP1-206ENST00000595523 PDE8AO60658 829 aa14.01□□□□□ -0.17
SHKBP1-206ENST00000595523 UBE3BQ7Z3V4 1068 aa14.01□□□□□ -0.17
SHKBP1-206ENST00000595523 SP8Q8IXZ3 490 aa14.01□□□□□ -0.17
SHKBP1-206ENST00000595523 BCL2L13Q9BXK5 485 aa14.01□□□□□ -0.17
SHKBP1-206ENST00000595523 SEC31BQ9NQW1 1179 aa14.01□□□□□ -0.17
SHKBP1-206ENST00000595523 SCN4AP35499 1836 aa14.01□□□□□ -0.17
SHKBP1-206ENST00000595523 GLTPD2A6NH11 291 aa14□□□□□ -0.17
SHKBP1-206ENST00000595523 IARSP41252 1262 aaKnown RBP14□□□□□ -0.17
SHKBP1-206ENST00000595523 HNRNPUQ00839 825 aaKnown RBP eCLIP14□□□□□ -0.17
SHKBP1-206ENST00000595523 KDM2BQ8NHM5 1336 aa13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 CTSWP56202 376 aa13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 ALDH1L2Q3SY69 923 aa13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 GRIPAP1Q4V328 841 aa13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 TTLL11Q8NHH1 800 aa13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 CCDC85AQ96PX6 553 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 RTFDC1Q9BY42 306 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-206ENST00000595523 RTL9Q8NET4 1388 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 ZNF541Q9H0D2 1346 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 POTECB2RU33 542 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 HSP90B1P14625 803 aaKnown RBP13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 C1QTNF8P60827 252 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 CCDC152Q4G0S7 254 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 TMC4Q7Z404 712 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 PLA2G12BQ9BX93 195 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 SCN9AQ15858 1988 aa13.98□□□□□ -0.17
SHKBP1-206ENST00000595523 PSME4Q14997 1843 aa13.97□□□□□ -0.17
SHKBP1-206ENST00000595523 CT47B1P0C2W7 299 aaPredicted RBP13.97□□□□□ -0.17
SHKBP1-206ENST00000595523 RPS8P62241 208 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-206ENST00000595523 MPNDQ8N594 471 aa13.97□□□□□ -0.17
SHKBP1-206ENST00000595523 GREM2Q9H772 168 aa13.97□□□□□ -0.17
SHKBP1-206ENST00000595523 RRAGCQ9HB90 399 aa13.97□□□□□ -0.17
SHKBP1-206ENST00000595523 PTPRCP08575 1304 aa13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 FZD9O00144 591 aa13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 DDNO94850 711 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 AOC3Q16853 763 aa13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 SLC4A10Q6U841 1118 aa13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 DPP8Q6V1X1 898 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 SMC4Q9NTJ3 1288 aa13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 ZNF646O15015 1829 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-206ENST00000595523 GRM8O00222 908 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 ALDH1L1O75891 902 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 CSF1RP07333 972 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 RARSP54136 660 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 GPSM2P81274 684 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 FOXO4P98177 505 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 EPHA10Q5JZY3 1008 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 LARGE2Q8N3Y3 721 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 SRCIN1Q9C0H9 1055 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 TMX4Q9H1E5 349 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 ADAMTSL1Q8N6G6 1762 aa13.95□□□□□ -0.18
SHKBP1-206ENST00000595523 ZBED9Q6R2W3 1325 aa13.94□□□□□ -0.18
SHKBP1-206ENST00000595523 PPIP5K2O43314 1243 aa13.94□□□□□ -0.18
SHKBP1-206ENST00000595523 BRPF1P55201 1214 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-206ENST00000595523 FAM161AQ3B820 660 aa13.94□□□□□ -0.18
SHKBP1-206ENST00000595523 DPY19L2Q6NUT2 758 aa13.94□□□□□ -0.18
SHKBP1-206ENST00000595523 POLLQ9UGP5 575 aa13.94□□□□□ -0.18
SHKBP1-206ENST00000595523 UTYO14607 1347 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 KIAA2012Q0VF49 1180 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 ANKRD18AQ8IVF6 992 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 SUPT20HQ8NEM7 779 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 JDP2Q8WYK2 163 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 KAZALD1Q96I82 304 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 L3MBTL3Q96JM7 780 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 VPS33BQ9H267 617 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 PODXL2Q9NZ53 605 aa13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 NSFL1CQ9UNZ2 370 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-206ENST00000595523 TOMM70O94826 608 aa13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 NBPF7P0C2Y1 421 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 VEGFAP15692 232 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 ITGA6P23229 1130 aa13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 TBC1D16Q8TBP0 767 aa13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 GPR101Q96P66 508 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 CDC5LQ99459 802 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 C9orf78Q9NZ63 289 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 NOB1Q9ULX3 412 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-206ENST00000595523 WTIPA6NIX2 430 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-206ENST00000595523 NIM1KQ8IY84 436 aa13.91□□□□□ -0.18
SHKBP1-206ENST00000595523 GPC2Q8N158 579 aa13.91□□□□□ -0.18
SHKBP1-206ENST00000595523 SUCLG2Q96I99 432 aa13.91□□□□□ -0.18
SHKBP1-206ENST00000595523 BSDC1Q9NW68 430 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-206ENST00000595523 YDJCA8MPS7 323 aa13.9□□□□□ -0.18
SHKBP1-206ENST00000595523 LMBR1LQ6UX01 489 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms