RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 LRRC37AA6NMS7 1700 aa19.39■□□□□ 0.69
TRIM28-205ENST00000595028 VAMP4O75379 141 aa19.38■□□□□ 0.69
TRIM28-205ENST00000595028 POTEIP0CG38 1075 aa19.38■□□□□ 0.69
TRIM28-205ENST00000595028 POTEJP0CG39 1038 aa19.38■□□□□ 0.69
TRIM28-205ENST00000595028 KSR2Q6VAB6 950 aa19.38■□□□□ 0.69
TRIM28-205ENST00000595028 G2E3Q7L622 706 aa19.38■□□□□ 0.69
TRIM28-205ENST00000595028 PCDH10Q9P2E7 1040 aa19.38■□□□□ 0.69
TRIM28-205ENST00000595028 PI4KAP2A4QPH2 592 aa19.37■□□□□ 0.69
TRIM28-205ENST00000595028 SLC4A2P04920 1241 aa19.37■□□□□ 0.69
TRIM28-205ENST00000595028 SLC51AQ86UW1 340 aa19.37■□□□□ 0.69
TRIM28-205ENST00000595028 PI4KAP1Q8N8J0 262 aa19.37■□□□□ 0.69
TRIM28-205ENST00000595028 CCDC191Q8NCU4 936 aa19.37■□□□□ 0.69
TRIM28-205ENST00000595028 PSMD1Q99460 953 aa19.37■□□□□ 0.69
TRIM28-205ENST00000595028 LBX1P52954 281 aa19.36■□□□□ 0.69
TRIM28-205ENST00000595028 FLIIQ13045 1269 aa19.36■□□□□ 0.69
TRIM28-205ENST00000595028 ZBTB38Q8NAP3 1195 aaPredicted RBP19.36■□□□□ 0.69
TRIM28-205ENST00000595028 ABHD8Q96I13 439 aa19.36■□□□□ 0.69
TRIM28-205ENST00000595028 ZNF277Q9NRM2 450 aaPredicted RBP19.36■□□□□ 0.69
TRIM28-205ENST00000595028 CWC25Q9NXE8 425 aaPredicted RBP19.36■□□□□ 0.69
TRIM28-205ENST00000595028 MYH3P11055 1940 aa19.35■□□□□ 0.69
TRIM28-205ENST00000595028 IRS4O14654 1257 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-205ENST00000595028 VEGFBP49765 207 aa19.35■□□□□ 0.69
TRIM28-205ENST00000595028 GRIPAP1Q4V328 841 aa19.35■□□□□ 0.69
TRIM28-205ENST00000595028 RTL5Q5HYW3 569 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-205ENST00000595028 DDX46Q7L014 1031 aaKnown RBP19.35■□□□□ 0.69
TRIM28-205ENST00000595028 COL4A1P02462 1669 aa19.35■□□□□ 0.69
TRIM28-205ENST00000595028 PCCAP05165 728 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-205ENST00000595028 IARSP41252 1262 aaKnown RBP19.34■□□□□ 0.69
TRIM28-205ENST00000595028 GRAPQ13588 217 aa19.34■□□□□ 0.69
TRIM28-205ENST00000595028 SF3B3Q15393 1217 aaKnown RBP19.34■□□□□ 0.69
TRIM28-205ENST00000595028 GRAPLQ8TC17 118 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-205ENST00000595028 WBP1LQ9NX94 342 aa19.34■□□□□ 0.69
TRIM28-205ENST00000595028 ATP6V0A2Q9Y487 856 aa19.34■□□□□ 0.69
TRIM28-205ENST00000595028 COL4A5P29400 1685 aa19.33■□□□□ 0.69
TRIM28-205ENST00000595028 PASKQ96RG2 1323 aa19.33■□□□□ 0.69
TRIM28-205ENST00000595028 IGKV5-2P06315 115 aa19.33■□□□□ 0.68
TRIM28-205ENST00000595028 NEXNQ0ZGT2 675 aa19.33■□□□□ 0.68
TRIM28-205ENST00000595028 BBOX1O75936 387 aa19.32■□□□□ 0.68
TRIM28-205ENST00000595028 HSP90B1P14625 803 aaKnown RBP19.32■□□□□ 0.68
TRIM28-205ENST00000595028 FKBP5Q13451 457 aaPredicted RBP19.32■□□□□ 0.68
TRIM28-205ENST00000595028 TMX4Q9H1E5 349 aaPredicted RBP19.32■□□□□ 0.68
TRIM28-205ENST00000595028 DUOX1Q9NRD9 1551 aa19.32■□□□□ 0.68
TRIM28-205ENST00000595028 CDHR2Q9BYE9 1310 aa19.31■□□□□ 0.68
TRIM28-205ENST00000595028 E9PSI1 815 aa19.31■□□□□ 0.68
TRIM28-205ENST00000595028 DDNO94850 711 aaPredicted RBP19.31■□□□□ 0.68
TRIM28-205ENST00000595028 NEURL1BA8MQ27 555 aa19.3■□□□□ 0.68
TRIM28-205ENST00000595028 CWF19L2Q2TBE0 894 aaKnown RBP19.3■□□□□ 0.68
TRIM28-205ENST00000595028 TMC4Q7Z404 712 aa19.3■□□□□ 0.68
TRIM28-205ENST00000595028 SP8Q8IXZ3 490 aa19.3■□□□□ 0.68
TRIM28-205ENST00000595028 DNAAF4Q8WXU2 420 aa19.3■□□□□ 0.68
TRIM28-205ENST00000595028 LTBP1Q14766 1721 aa19.3■□□□□ 0.68
TRIM28-205ENST00000595028 ZNF541Q9H0D2 1346 aa19.29■□□□□ 0.68
TRIM28-205ENST00000595028 HSPA8P11142 646 aaKnown RBP19.29■□□□□ 0.68
TRIM28-205ENST00000595028 JARID2Q92833 1246 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-205ENST00000595028 CELF1Q92879 486 aaKnown RBP19.29■□□□□ 0.68
TRIM28-205ENST00000595028 SCN4AP35499 1836 aa19.29■□□□□ 0.68
TRIM28-205ENST00000595028 TMEM88BA6NKF7 163 aa19.28■□□□□ 0.68
TRIM28-205ENST00000595028 PDE8AO60658 829 aa19.28■□□□□ 0.68
TRIM28-205ENST00000595028 MLLT1Q03111 559 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-205ENST00000595028 DIEXFQ68CQ4 756 aaKnown RBP19.28■□□□□ 0.68
TRIM28-205ENST00000595028 RTFDC1Q9BY42 306 aaPredicted RBP19.28■□□□□ 0.68
TRIM28-205ENST00000595028 SLFN5Q08AF3 891 aa19.27■□□□□ 0.68
TRIM28-205ENST00000595028 DPP8Q6V1X1 898 aaPredicted RBP19.27■□□□□ 0.68
TRIM28-205ENST00000595028 LDHDQ86WU2 507 aa19.27■□□□□ 0.68
TRIM28-205ENST00000595028 JDP2Q8WYK2 163 aa19.27■□□□□ 0.68
TRIM28-205ENST00000595028 SPEF2Q9C093 1822 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 FZD9O00144 591 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 CCDC152Q4G0S7 254 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 LARGE2Q8N3Y3 721 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 MPNDQ8N594 471 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 SUPT20HQ8NEM7 779 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 LINS1Q8NG48 757 aa19.26■□□□□ 0.67
TRIM28-205ENST00000595028 PPIP5K2O43314 1243 aa19.25■□□□□ 0.67
TRIM28-205ENST00000595028 ITGBL1O95965 494 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-205ENST00000595028 CTSWP56202 376 aa19.25■□□□□ 0.67
TRIM28-205ENST00000595028 GCKRQ14397 625 aa19.25■□□□□ 0.67
TRIM28-205ENST00000595028 UBE3BQ7Z3V4 1068 aa19.25■□□□□ 0.67
TRIM28-205ENST00000595028 L3MBTL3Q96JM7 780 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-205ENST00000595028 SEC31BQ9NQW1 1179 aa19.25■□□□□ 0.67
TRIM28-205ENST00000595028 IQCA1LA6NCM1 817 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 CCDC85CA6NKD9 419 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 F6X3S4 739 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 H7C1W4 665 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 RGS19P49795 217 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 AOC3Q16853 763 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 CDCA7LQ96GN5 454 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 VPS33BQ9H267 617 aa19.24■□□□□ 0.67
TRIM28-205ENST00000595028 TAF1DQ9H5J8 278 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-205ENST00000595028 RTL9Q8NET4 1388 aa19.23■□□□□ 0.67
TRIM28-205ENST00000595028 TNRC18O15417 2968 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-205ENST00000595028 RPS8P62241 208 aaKnown RBP19.23■□□□□ 0.67
TRIM28-205ENST00000595028 NIM1KQ8IY84 436 aa19.23■□□□□ 0.67
TRIM28-205ENST00000595028 MIER1Q8N108 512 aa19.23■□□□□ 0.67
TRIM28-205ENST00000595028 CCDC85AQ96PX6 553 aaPredicted RBP19.23■□□□□ 0.67
TRIM28-205ENST00000595028 RASSF10A6NK89 507 aa19.22■□□□□ 0.67
TRIM28-205ENST00000595028 EIF6P56537 245 aaKnown RBP19.22■□□□□ 0.67
TRIM28-205ENST00000595028 BEND3Q5T5X7 828 aa19.22■□□□□ 0.67
TRIM28-205ENST00000595028 GPC2Q8N158 579 aa19.22■□□□□ 0.67
TRIM28-205ENST00000595028 PLA2G12BQ9BX93 195 aa19.22■□□□□ 0.67
TRIM28-205ENST00000595028 CASP7P55210 303 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms