RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ZNF277Q9NRM2 450 aaPredicted RBP22.7■■□□□ 1.22
SHKBP1-204ENST00000594862 FLIIQ13045 1269 aa22.69■■□□□ 1.22
SHKBP1-204ENST00000594862 SP8Q8IXZ3 490 aa22.69■■□□□ 1.22
SHKBP1-204ENST00000594862 LRRC37AA6NMS7 1700 aa22.68■■□□□ 1.22
SHKBP1-204ENST00000594862 CDHR2Q9BYE9 1310 aa22.67■■□□□ 1.22
SHKBP1-204ENST00000594862 TCERG1O14776 1098 aaKnown RBP22.67■■□□□ 1.22
SHKBP1-204ENST00000594862 FSTL1Q12841 308 aa22.67■■□□□ 1.22
SHKBP1-204ENST00000594862 FKBP5Q13451 457 aaPredicted RBP22.67■■□□□ 1.22
SHKBP1-204ENST00000594862 IQCA1LA6NCM1 817 aa22.66■■□□□ 1.22
SHKBP1-204ENST00000594862 SPINK5Q9NQ38 1064 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-204ENST00000594862 PCNTO95613 3336 aa22.65■■□□□ 1.22
SHKBP1-204ENST00000594862 E9PSI1 815 aa22.65■■□□□ 1.22
SHKBP1-204ENST00000594862 PDE8AO60658 829 aa22.65■■□□□ 1.22
SHKBP1-204ENST00000594862 RTL5Q5HYW3 569 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-204ENST00000594862 DPP8Q6V1X1 898 aaPredicted RBP22.65■■□□□ 1.22
SHKBP1-204ENST00000594862 SCN4AP35499 1836 aa22.64■■□□□ 1.22
SHKBP1-204ENST00000594862 CCDC152Q4G0S7 254 aa22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 G2E3Q7L622 706 aa22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 LARGE2Q8N3Y3 721 aa22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 MPNDQ8N594 471 aa22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 SMC1BQ8NDV3 1235 aa22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 L3MBTL3Q96JM7 780 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 RTFDC1Q9BY42 306 aaPredicted RBP22.64■■□□□ 1.21
SHKBP1-204ENST00000594862 FZD9O00144 591 aa22.63■■□□□ 1.21
SHKBP1-204ENST00000594862 IGKV5-2P06315 115 aa22.63■■□□□ 1.21
SHKBP1-204ENST00000594862 EIF6P56537 245 aaKnown RBP22.63■■□□□ 1.21
SHKBP1-204ENST00000594862 DNAAF4Q8WXU2 420 aa22.63■■□□□ 1.21
SHKBP1-204ENST00000594862 ZNF428Q96B54 188 aa22.63■■□□□ 1.21
SHKBP1-204ENST00000594862 NEURL1BA8MQ27 555 aa22.62■■□□□ 1.21
SHKBP1-204ENST00000594862 NIM1KQ8IY84 436 aa22.62■■□□□ 1.21
SHKBP1-204ENST00000594862 MYH3P11055 1940 aa22.61■■□□□ 1.21
SHKBP1-204ENST00000594862 PPIP5K2O43314 1243 aa22.61■■□□□ 1.21
SHKBP1-204ENST00000594862 DDNO94850 711 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-204ENST00000594862 GPC2Q8N158 579 aa22.61■■□□□ 1.21
SHKBP1-204ENST00000594862 LINS1Q8NG48 757 aa22.61■■□□□ 1.21
SHKBP1-204ENST00000594862 ZNF541Q9H0D2 1346 aa22.6■■□□□ 1.21
SHKBP1-204ENST00000594862 RPS8P62241 208 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-204ENST00000594862 CWF19L2Q2TBE0 894 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-204ENST00000594862 CELF1Q92879 486 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-204ENST00000594862 TAF1P21675 1872 aa22.59■■□□□ 1.21
SHKBP1-204ENST00000594862 CTSWP56202 376 aa22.58■■□□□ 1.21
SHKBP1-204ENST00000594862 GCKRQ14397 625 aa22.58■■□□□ 1.21
SHKBP1-204ENST00000594862 RTL9Q8NET4 1388 aa22.58■■□□□ 1.21
SHKBP1-204ENST00000594862 POTECB2RU33 542 aa22.57■■□□□ 1.2
SHKBP1-204ENST00000594862 KIAA2012Q0VF49 1180 aa22.57■■□□□ 1.2
SHKBP1-204ENST00000594862 CDC5LQ99459 802 aaKnown RBP22.57■■□□□ 1.2
SHKBP1-204ENST00000594862 DUOX1Q9NRD9 1551 aa22.57■■□□□ 1.2
SHKBP1-204ENST00000594862 COL4A5P29400 1685 aa22.57■■□□□ 1.2
SHKBP1-204ENST00000594862 H7C1W4 665 aa22.56■■□□□ 1.2
SHKBP1-204ENST00000594862 HTRA3P83110 453 aa22.56■■□□□ 1.2
SHKBP1-204ENST00000594862 SLFN5Q08AF3 891 aa22.56■■□□□ 1.2
SHKBP1-204ENST00000594862 AOC3Q16853 763 aa22.56■■□□□ 1.2
SHKBP1-204ENST00000594862 UBE3BQ7Z3V4 1068 aa22.56■■□□□ 1.2
SHKBP1-204ENST00000594862 HACL1Q9UJ83 578 aa22.56■■□□□ 1.2
SHKBP1-204ENST00000594862 LTBP1Q14766 1721 aa22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 DIEXFQ68CQ4 756 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 ANKRD18AQ8IVF6 992 aa22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 EYA3Q99504 573 aa22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 PLA2G12BQ9BX93 195 aa22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 ZNRF3Q9ULT6 936 aa22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 NSFL1CQ9UNZ2 370 aaKnown RBP22.55■■□□□ 1.2
SHKBP1-204ENST00000594862 LMOD1P29536 600 aaPredicted RBP22.54■■□□□ 1.2
SHKBP1-204ENST00000594862 CT47B1P0C2W7 299 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-204ENST00000594862 SLC51AQ86UW1 340 aa22.53■■□□□ 1.2
SHKBP1-204ENST00000594862 PNMA8AQ86V59 439 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-204ENST00000594862 TTLL11Q8NHH1 800 aa22.53■■□□□ 1.2
SHKBP1-204ENST00000594862 TAF1DQ9H5J8 278 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-204ENST00000594862 PODXL2Q9NZ53 605 aa22.53■■□□□ 1.2
SHKBP1-204ENST00000594862 LDHDQ86WU2 507 aa22.52■■□□□ 1.2
SHKBP1-204ENST00000594862 JARID2Q92833 1246 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-204ENST00000594862 KLRG1Q96E93 195 aa22.52■■□□□ 1.2
SHKBP1-204ENST00000594862 SEC31BQ9NQW1 1179 aa22.52■■□□□ 1.2
SHKBP1-204ENST00000594862 GJA3Q9Y6H8 435 aa22.52■■□□□ 1.2
SHKBP1-204ENST00000594862 PTPRCP08575 1304 aa22.52■■□□□ 1.2
SHKBP1-204ENST00000594862 C6orf229H3BNL8 230 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 ALDH1L1O75891 902 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 TNIP1Q15025 636 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 WASHC4Q2M389 1173 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 BEND3Q5T5X7 828 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 CHADLQ6NUI6 762 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 JMYQ8N9B5 988 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 COL4A1P02462 1669 aa22.51■■□□□ 1.19
SHKBP1-204ENST00000594862 EPHX2P34913 555 aa22.5■■□□□ 1.19
SHKBP1-204ENST00000594862 GPSM2P81274 684 aa22.5■■□□□ 1.19
SHKBP1-204ENST00000594862 ALDH1L2Q3SY69 923 aa22.5■■□□□ 1.19
SHKBP1-204ENST00000594862 ANKIB1Q9P2G1 1089 aa22.5■■□□□ 1.19
SHKBP1-204ENST00000594862 F6X3S4 739 aa22.49■■□□□ 1.19
SHKBP1-204ENST00000594862 CASP7P55210 303 aa22.49■■□□□ 1.19
SHKBP1-204ENST00000594862 CCDC85AQ96PX6 553 aaPredicted RBP22.49■■□□□ 1.19
SHKBP1-204ENST00000594862 GGA1Q9UJY5 639 aa22.49■■□□□ 1.19
SHKBP1-204ENST00000594862 XDHP47989 1333 aa22.49■■□□□ 1.19
SHKBP1-204ENST00000594862 IGHMBP2P38935 993 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 CIAPIN1Q6FI81 312 aa22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 TRMT2AQ8IZ69 625 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 TBC1D16Q8TBP0 767 aa22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 SRCIN1Q9C0H9 1055 aa22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 GREM2Q9H772 168 aa22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 BSDC1Q9NW68 430 aaPredicted RBP22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 ADAMTSL1Q8N6G6 1762 aa22.48■■□□□ 1.19
SHKBP1-204ENST00000594862 GRM8O00222 908 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms