RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GRAPQ13588 217 aa16.23■□□□□ 0.19
UPF1-203ENST00000594504 DPP8Q6V1X1 898 aaPredicted RBP16.23■□□□□ 0.19
UPF1-203ENST00000594504 PLBD2Q8NHP8 589 aa16.23■□□□□ 0.19
UPF1-203ENST00000594504 GRAPLQ8TC17 118 aaPredicted RBP16.23■□□□□ 0.19
UPF1-203ENST00000594504 FAM89AQ96GI7 184 aa16.23■□□□□ 0.19
UPF1-203ENST00000594504 CFAP44Q96MT7 982 aa16.23■□□□□ 0.19
UPF1-203ENST00000594504 RTFDC1Q9BY42 306 aaPredicted RBP16.23■□□□□ 0.19
UPF1-203ENST00000594504 ELL2O00472 640 aaPredicted RBP16.22■□□□□ 0.19
UPF1-203ENST00000594504 APAF1O14727 1248 aa16.22■□□□□ 0.19
UPF1-203ENST00000594504 DEFB115Q30KQ5 88 aa16.22■□□□□ 0.19
UPF1-203ENST00000594504 SUPT20HQ8NEM7 779 aa16.22■□□□□ 0.19
UPF1-203ENST00000594504 ISCA1Q9BUE6 129 aa16.22■□□□□ 0.19
UPF1-203ENST00000594504 DBF4Q9UBU7 674 aaPredicted RBP16.22■□□□□ 0.19
UPF1-203ENST00000594504 ZNRF3Q9ULT6 936 aa16.22■□□□□ 0.19
UPF1-203ENST00000594504 TRAF5O00463 557 aa16.21■□□□□ 0.19
UPF1-203ENST00000594504 CELF1Q92879 486 aaKnown RBP16.21■□□□□ 0.19
UPF1-203ENST00000594504 VPS33BQ9H267 617 aa16.21■□□□□ 0.19
UPF1-203ENST00000594504 PHAXQ9H814 394 aaKnown RBP16.21■□□□□ 0.19
UPF1-203ENST00000594504 ABT1Q9ULW3 272 aaKnown RBP16.21■□□□□ 0.19
UPF1-203ENST00000594504 DDX60Q8IY21 1712 aaKnown RBP16.2■□□□□ 0.18
UPF1-203ENST00000594504 RAD17O75943 681 aa16.2■□□□□ 0.18
UPF1-203ENST00000594504 HOXB7P09629 217 aa16.2■□□□□ 0.18
UPF1-203ENST00000594504 ZNF853P0CG23 659 aa16.2■□□□□ 0.18
UPF1-203ENST00000594504 KIAA2012Q0VF49 1180 aa16.2■□□□□ 0.18
UPF1-203ENST00000594504 USP50Q70EL3 339 aaPredicted RBP16.2■□□□□ 0.18
UPF1-203ENST00000594504 GPRC5DQ9NZD1 345 aa16.2■□□□□ 0.18
UPF1-203ENST00000594504 COL4A1P02462 1669 aa16.19■□□□□ 0.18
UPF1-203ENST00000594504 RASSF10A6NK89 507 aa16.19■□□□□ 0.18
UPF1-203ENST00000594504 YDJCA8MPS7 323 aa16.19■□□□□ 0.18
UPF1-203ENST00000594504 GMPSP49915 693 aaPredicted RBP16.19■□□□□ 0.18
UPF1-203ENST00000594504 CIAPIN1Q6FI81 312 aa16.19■□□□□ 0.18
UPF1-203ENST00000594504 HYPKQ9NX55 129 aa16.19■□□□□ 0.18
UPF1-203ENST00000594504 SHTN1A0MZ66 631 aa16.18■□□□□ 0.18
UPF1-203ENST00000594504 RIMBP2O15034 1052 aa16.18■□□□□ 0.18
UPF1-203ENST00000594504 SF3B3Q15393 1217 aaKnown RBP16.18■□□□□ 0.18
UPF1-203ENST00000594504 CST9Q5W186 159 aa16.18■□□□□ 0.18
UPF1-203ENST00000594504 JARID2Q92833 1246 aaPredicted RBP16.18■□□□□ 0.18
UPF1-203ENST00000594504 ADARB2Q9NS39 739 aaKnown RBP16.18■□□□□ 0.18
UPF1-203ENST00000594504 WDR33Q9C0J8 1336 aaKnown RBP16.18■□□□□ 0.18
UPF1-203ENST00000594504 HIRAP54198 1017 aaPredicted RBP16.17■□□□□ 0.18
UPF1-203ENST00000594504 RIC3Q7Z5B4 369 aa16.17■□□□□ 0.18
UPF1-203ENST00000594504 BCL2L13Q9BXK5 485 aa16.17■□□□□ 0.18
UPF1-203ENST00000594504 WBP1LQ9NX94 342 aa16.17■□□□□ 0.18
UPF1-203ENST00000594504 NSFL1CQ9UNZ2 370 aaKnown RBP16.17■□□□□ 0.18
UPF1-203ENST00000594504 IRS4O14654 1257 aaPredicted RBP16.16■□□□□ 0.18
UPF1-203ENST00000594504 GPSM2P81274 684 aa16.16■□□□□ 0.18
UPF1-203ENST00000594504 GRM1Q13255 1194 aa16.16■□□□□ 0.18
UPF1-203ENST00000594504 DIEXFQ68CQ4 756 aaKnown RBP16.16■□□□□ 0.18
UPF1-203ENST00000594504 C8orf58Q8NAV2 365 aa16.16■□□□□ 0.18
UPF1-203ENST00000594504 GPR101Q96P66 508 aaPredicted RBP16.16■□□□□ 0.18
UPF1-203ENST00000594504 MYD88Q99836 296 aa16.16■□□□□ 0.18
UPF1-203ENST00000594504 ZBTB12Q9Y330 459 aaPredicted RBP16.16■□□□□ 0.18
UPF1-203ENST00000594504 DUOX1Q9NRD9 1551 aa16.16■□□□□ 0.18
UPF1-203ENST00000594504 LBX1P52954 281 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 GNAI1P63096 354 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 WASHC4Q2M389 1173 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 CYP4F22Q6NT55 531 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 PAXIP1Q6ZW49 1069 aaPredicted RBP16.15■□□□□ 0.18
UPF1-203ENST00000594504 AIDAQ96BJ3 306 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 GLIS2Q9BZE0 524 aaPredicted RBP16.15■□□□□ 0.18
UPF1-203ENST00000594504 DBNDD1Q9H9R9 158 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 SEC31BQ9NQW1 1179 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 KCNQ5Q9NR82 932 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 IFT57Q9NWB7 429 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 POLLQ9UGP5 575 aa16.15■□□□□ 0.18
UPF1-203ENST00000594504 CNOT7Q9UIV1 285 aaKnown RBP16.15■□□□□ 0.18
UPF1-203ENST00000594504 TRPM7Q96QT4 1865 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 C6orf229H3BNL8 230 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 CTCFP49711 727 aaPredicted RBP16.14■□□□□ 0.17
UPF1-203ENST00000594504 TRIM28Q13263 835 aaKnown RBP16.14■□□□□ 0.17
UPF1-203ENST00000594504 TNIP1Q15025 636 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 DOK7Q18PE1 504 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 DLK2Q6UY11 383 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 TMC4Q7Z404 712 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 TRPM4Q8TD43 1214 aa16.14■□□□□ 0.17
UPF1-203ENST00000594504 CCER2I3L3R5 266 aa16.13■□□□□ 0.17
UPF1-203ENST00000594504 PSMD14O00487 310 aa16.13■□□□□ 0.17
UPF1-203ENST00000594504 RPS8P62241 208 aaKnown RBP16.13■□□□□ 0.17
UPF1-203ENST00000594504 GOLGA2Q08379 1002 aa16.13■□□□□ 0.17
UPF1-203ENST00000594504 TSPYL6Q8N831 410 aa16.13■□□□□ 0.17
UPF1-203ENST00000594504 CAPNS2Q96L46 248 aa16.13■□□□□ 0.17
UPF1-203ENST00000594504 CCDC85AQ96PX6 553 aaPredicted RBP16.13■□□□□ 0.17
UPF1-203ENST00000594504 LRRC37AA6NMS7 1700 aa16.13■□□□□ 0.17
UPF1-203ENST00000594504 CELF2O95319 508 aaKnown RBP16.12■□□□□ 0.17
UPF1-203ENST00000594504 SAMD7Q7Z3H4 446 aa16.12■□□□□ 0.17
UPF1-203ENST00000594504 MICALL2Q8IY33 904 aa16.12■□□□□ 0.17
UPF1-203ENST00000594504 ZBTB38Q8NAP3 1195 aaPredicted RBP16.12■□□□□ 0.17
UPF1-203ENST00000594504 ZNF408Q9H9D4 720 aa16.12■□□□□ 0.17
UPF1-203ENST00000594504 PRDM10Q9NQV6 1147 aa16.12■□□□□ 0.17
UPF1-203ENST00000594504 PGAP2Q9UHJ9 254 aa16.12■□□□□ 0.17
UPF1-203ENST00000594504 TLL2Q9Y6L7 1015 aa16.12■□□□□ 0.17
UPF1-203ENST00000594504 HSPA8P11142 646 aaKnown RBP16.11■□□□□ 0.17
UPF1-203ENST00000594504 FAM9BQ8IZU0 186 aa16.11■□□□□ 0.17
UPF1-203ENST00000594504 TBC1D16Q8TBP0 767 aa16.11■□□□□ 0.17
UPF1-203ENST00000594504 H7C1D1 291 aa16.1■□□□□ 0.17
UPF1-203ENST00000594504 ECE2O60344 883 aa16.1■□□□□ 0.17
UPF1-203ENST00000594504 AOC2O75106 756 aa16.1■□□□□ 0.17
UPF1-203ENST00000594504 EGFRP00533 1210 aa16.1■□□□□ 0.17
UPF1-203ENST00000594504 MAP2K1Q02750 393 aaPredicted RBP16.1■□□□□ 0.17
UPF1-203ENST00000594504 RBM26Q5T8P6 1007 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 159.8 ms