RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 GPRC5DQ9NZD1 345 aa15.5■□□□□ 0.07
LIG3-209ENST00000586435 TRMT112Q9UI30 125 aaKnown RBP15.5■□□□□ 0.07
LIG3-209ENST00000586435 HCLS1P14317 486 aaPredicted RBP15.49■□□□□ 0.07
LIG3-209ENST00000586435 CXCL9Q07325 125 aa15.49■□□□□ 0.07
LIG3-209ENST00000586435 NEUROD2Q15784 382 aa15.49■□□□□ 0.07
LIG3-209ENST00000586435 MPNDQ8N594 471 aa15.49■□□□□ 0.07
LIG3-209ENST00000586435 PLBD2Q8NHP8 589 aa15.49■□□□□ 0.07
LIG3-209ENST00000586435 ADARB2Q9NS39 739 aaKnown RBP15.49■□□□□ 0.07
LIG3-209ENST00000586435 CHPF2Q9P2E5 772 aa15.49■□□□□ 0.07
LIG3-209ENST00000586435 WDR33Q9C0J8 1336 aaKnown RBP15.48■□□□□ 0.07
LIG3-209ENST00000586435 WDR43Q15061 677 aaKnown RBP eCLIP15.48■□□□□ 0.07
LIG3-209ENST00000586435 HDGFL1Q5TGJ6 251 aa15.48■□□□□ 0.07
LIG3-209ENST00000586435 DBF4Q9UBU7 674 aaPredicted RBP15.48■□□□□ 0.07
LIG3-209ENST00000586435 ABT1Q9ULW3 272 aaKnown RBP15.48■□□□□ 0.07
LIG3-209ENST00000586435 MAP2K1Q02750 393 aaPredicted RBP15.47■□□□□ 0.07
LIG3-209ENST00000586435 DDX10Q13206 875 aaKnown RBP15.47■□□□□ 0.07
LIG3-209ENST00000586435 CIAPIN1Q6FI81 312 aa15.47■□□□□ 0.07
LIG3-209ENST00000586435 CFAP44Q96MT7 982 aa15.47■□□□□ 0.07
LIG3-209ENST00000586435 ISCA1Q9BUE6 129 aa15.47■□□□□ 0.07
LIG3-209ENST00000586435 SF3B3Q15393 1217 aaKnown RBP15.46■□□□□ 0.07
LIG3-209ENST00000586435 ANKRD13DQ6ZTN6 518 aa15.46■□□□□ 0.07
LIG3-209ENST00000586435 LAS1LQ9Y4W2 734 aaKnown RBP15.46■□□□□ 0.07
LIG3-209ENST00000586435 ECE1P42892 770 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 GMPSP49915 693 aaPredicted RBP15.45■□□□□ 0.06
LIG3-209ENST00000586435 TNIP1Q15025 636 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 CST9Q5W186 159 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 HYPKQ9NX55 129 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 PGAP2Q9UHJ9 254 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 ADAMTS8Q9UP79 889 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 TLL2Q9Y6L7 1015 aa15.45■□□□□ 0.06
LIG3-209ENST00000586435 TRAF5O00463 557 aa15.44■□□□□ 0.06
LIG3-209ENST00000586435 HSPA8P11142 646 aaKnown RBP15.44■□□□□ 0.06
LIG3-209ENST00000586435 FMR1Q06787 632 aaKnown RBP eCLIP15.44■□□□□ 0.06
LIG3-209ENST00000586435 TRIM28Q13263 835 aaKnown RBP15.44■□□□□ 0.06
LIG3-209ENST00000586435 ZC3H15Q8WU90 426 aaKnown RBP15.44■□□□□ 0.06
LIG3-209ENST00000586435 CAPNS2Q96L46 248 aa15.44■□□□□ 0.06
LIG3-209ENST00000586435 COL4A1P02462 1669 aa15.44■□□□□ 0.06
LIG3-209ENST00000586435 YDJCA8MPS7 323 aa15.43■□□□□ 0.06
LIG3-209ENST00000586435 ZNF853P0CG23 659 aa15.43■□□□□ 0.06
LIG3-209ENST00000586435 LBX1P52954 281 aa15.43■□□□□ 0.06
LIG3-209ENST00000586435 DUSP27Q5VZP5 1158 aa15.43■□□□□ 0.06
LIG3-209ENST00000586435 BCL2L13Q9BXK5 485 aa15.43■□□□□ 0.06
LIG3-209ENST00000586435 MBIPQ9NS73 344 aa15.43■□□□□ 0.06
LIG3-209ENST00000586435 RAD17O75943 681 aa15.42■□□□□ 0.06
LIG3-209ENST00000586435 CELF1Q92879 486 aaKnown RBP15.42■□□□□ 0.06
LIG3-209ENST00000586435 FAM89AQ96GI7 184 aa15.42■□□□□ 0.06
LIG3-209ENST00000586435 HHIPL1Q96JK4 782 aa15.42■□□□□ 0.06
LIG3-209ENST00000586435 PSME4Q14997 1843 aa15.42■□□□□ 0.06
LIG3-209ENST00000586435 ATP5J2-PTCD1G3V325 749 aa15.41■□□□□ 0.06
LIG3-209ENST00000586435 SAPCD2Q86UD0 394 aa15.41■□□□□ 0.06
LIG3-209ENST00000586435 DPF2Q92785 391 aa15.41■□□□□ 0.06
LIG3-209ENST00000586435 PRKRIP1Q9H875 184 aaPredicted RBP15.41■□□□□ 0.06
LIG3-209ENST00000586435 IFT57Q9NWB7 429 aa15.41■□□□□ 0.06
LIG3-209ENST00000586435 POLR2AP24928 1970 aaKnown RBP15.41■□□□□ 0.06
LIG3-209ENST00000586435 SCN9AQ15858 1988 aa15.4■□□□□ 0.06
LIG3-209ENST00000586435 IRS4O14654 1257 aaPredicted RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 MAP2K2P36507 400 aa15.4■□□□□ 0.06
LIG3-209ENST00000586435 HIRAP54198 1017 aaPredicted RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 CALD1Q05682 793 aaKnown RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 WASHC4Q2M389 1173 aa15.4■□□□□ 0.06
LIG3-209ENST00000586435 CYP4F22Q6NT55 531 aa15.4■□□□□ 0.06
LIG3-209ENST00000586435 PAXIP1Q6ZW49 1069 aaPredicted RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 TRPM4Q8TD43 1214 aa15.4■□□□□ 0.06
LIG3-209ENST00000586435 GPR101Q96P66 508 aaPredicted RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 GLIS2Q9BZE0 524 aaPredicted RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 CNOT7Q9UIV1 285 aaKnown RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 NSFL1CQ9UNZ2 370 aaKnown RBP15.4■□□□□ 0.06
LIG3-209ENST00000586435 H7C1D1 291 aa15.39■□□□□ 0.05
LIG3-209ENST00000586435 CELF2O95319 508 aaKnown RBP15.39■□□□□ 0.05
LIG3-209ENST00000586435 HSP90B1P14625 803 aaKnown RBP15.39■□□□□ 0.05
LIG3-209ENST00000586435 GNAI1P63096 354 aa15.39■□□□□ 0.05
LIG3-209ENST00000586435 GOLGA2Q08379 1002 aa15.39■□□□□ 0.05
LIG3-209ENST00000586435 CDC37L1Q7L3B6 337 aa15.39■□□□□ 0.05
LIG3-209ENST00000586435 ZBTB38Q8NAP3 1195 aaPredicted RBP15.39■□□□□ 0.05
LIG3-209ENST00000586435 EYA3Q99504 573 aa15.39■□□□□ 0.05
LIG3-209ENST00000586435 MYH3P11055 1940 aa15.39■□□□□ 0.05
LIG3-209ENST00000586435 RPS12P25398 132 aaKnown RBP15.38■□□□□ 0.05
LIG3-209ENST00000586435 GPSM2P81274 684 aa15.38■□□□□ 0.05
LIG3-209ENST00000586435 RIC3Q7Z5B4 369 aa15.38■□□□□ 0.05
LIG3-209ENST00000586435 MICALL2Q8IY33 904 aa15.38■□□□□ 0.05
LIG3-209ENST00000586435 ZNF428Q96B54 188 aa15.38■□□□□ 0.05
LIG3-209ENST00000586435 BEGAINQ9BUH8 593 aa15.38■□□□□ 0.05
LIG3-209ENST00000586435 POLLQ9UGP5 575 aa15.38■□□□□ 0.05
LIG3-209ENST00000586435 ZNF609O15014 1411 aa15.37■□□□□ 0.05
LIG3-209ENST00000586435 SHTN1A0MZ66 631 aa15.37■□□□□ 0.05
LIG3-209ENST00000586435 PSMD14O00487 310 aa15.37■□□□□ 0.05
LIG3-209ENST00000586435 RPS8P62241 208 aaKnown RBP15.37■□□□□ 0.05
LIG3-209ENST00000586435 CCDC191Q8NCU4 936 aa15.37■□□□□ 0.05
LIG3-209ENST00000586435 DBNDD1Q9H9R9 158 aa15.37■□□□□ 0.05
LIG3-209ENST00000586435 PODXL2Q9NZ53 605 aa15.37■□□□□ 0.05
LIG3-209ENST00000586435 RTL9Q8NET4 1388 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 C6orf229H3BNL8 230 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 APAF1O14727 1248 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 CA12O43570 354 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 ECE2O60344 883 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 GRM1Q13255 1194 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 RTL5Q5HYW3 569 aaPredicted RBP15.36■□□□□ 0.05
LIG3-209ENST00000586435 TBC1D16Q8TBP0 767 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 CHMP4AQ9BY43 222 aa15.36■□□□□ 0.05
LIG3-209ENST00000586435 PHAXQ9H814 394 aaKnown RBP15.36■□□□□ 0.05
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