RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 HOXC9P31274 260 aa8.15□□□□□ -1.1
PTPRM-213ENST00000580949 AMPHP49418 695 aa8.15□□□□□ -1.1
PTPRM-213ENST00000580949 WASHC4Q2M389 1173 aa8.15□□□□□ -1.1
PTPRM-213ENST00000580949 WDR63Q8IWG1 891 aa8.15□□□□□ -1.1
PTPRM-213ENST00000580949 SLC10A4Q96EP9 437 aa8.15□□□□□ -1.1
PTPRM-213ENST00000580949 SLAIN2Q9P270 581 aa8.15□□□□□ -1.1
PTPRM-213ENST00000580949 CDV3Q9UKY7 258 aaKnown RBP8.15□□□□□ -1.1
PTPRM-213ENST00000580949 ZNF330Q9Y3S2 320 aaPredicted RBP8.15□□□□□ -1.1
PTPRM-213ENST00000580949 MAP2P11137 1827 aaKnown RBP8.15□□□□□ -1.11
PTPRM-213ENST00000580949 E9PSI1 815 aa8.14□□□□□ -1.11
PTPRM-213ENST00000580949 SMPD1P17405 629 aa8.14□□□□□ -1.11
PTPRM-213ENST00000580949 RIPK4P57078 832 aa8.14□□□□□ -1.11
PTPRM-213ENST00000580949 SULT6B1Q6IMI4 303 aa8.14□□□□□ -1.11
PTPRM-213ENST00000580949 BRINP3Q76B58 766 aa8.14□□□□□ -1.11
PTPRM-213ENST00000580949 ZNF592Q92610 1267 aa8.14□□□□□ -1.11
PTPRM-213ENST00000580949 MARF1Q9Y4F3 1742 aaKnown RBP8.14□□□□□ -1.11
PTPRM-213ENST00000580949 FLT4P35916 1363 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 USP19O94966 1318 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 MAPK8IP3Q9UPT6 1336 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 J3QL48 77 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 DGAT1O75907 488 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 ADH1CP00326 375 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 GCP02774 474 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 MCCD1P59942 119 aaPredicted RBP8.13□□□□□ -1.11
PTPRM-213ENST00000580949 NFE2L2Q16236 605 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 ARHGEF25Q86VW2 580 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 IP6K1Q92551 441 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 PNNQ9H307 717 aaKnown RBP8.13□□□□□ -1.11
PTPRM-213ENST00000580949 NFAT5O94916 1531 aa8.13□□□□□ -1.11
PTPRM-213ENST00000580949 FAM187AA6NFU0 413 aa8.12□□□□□ -1.11
PTPRM-213ENST00000580949 A6NJR5 290 aa8.12□□□□□ -1.11
PTPRM-213ENST00000580949 ARID5BQ14865 1188 aa8.12□□□□□ -1.11
PTPRM-213ENST00000580949 VASH1Q7L8A9 365 aaPredicted RBP8.12□□□□□ -1.11
PTPRM-213ENST00000580949 DZIP3Q86Y13 1208 aaKnown RBP8.12□□□□□ -1.11
PTPRM-213ENST00000580949 KCNH5Q8NCM2 988 aa8.12□□□□□ -1.11
PTPRM-213ENST00000580949 CLUAP1Q96AJ1 413 aa8.12□□□□□ -1.11
PTPRM-213ENST00000580949 WASF2Q9Y6W5 498 aa8.12□□□□□ -1.11
PTPRM-213ENST00000580949 XIRP1Q702N8 1843 aaKnown RBP8.12□□□□□ -1.11
PTPRM-213ENST00000580949 USP54Q70EL1 1684 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 KIF24Q5T7B8 1368 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 SPATA31A3Q5VYP0 1347 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 NPHP3Q7Z494 1330 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 GRM5P41594 1212 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 RRP1P56182 461 aaKnown RBP8.11□□□□□ -1.11
PTPRM-213ENST00000580949 NR5A1Q13285 461 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 PKDCCQ504Y2 493 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 LTV1Q96GA3 475 aaPredicted RBP8.11□□□□□ -1.11
PTPRM-213ENST00000580949 THUMPD2Q9BTF0 503 aaKnown RBP8.11□□□□□ -1.11
PTPRM-213ENST00000580949 PCDHB9Q9Y5E1 797 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 TRPM3Q9HCF6 1732 aaPredicted RBP8.11□□□□□ -1.11
PTPRM-213ENST00000580949 PXDNQ92626 1479 aa8.11□□□□□ -1.11
PTPRM-213ENST00000580949 ARHGEF10O15013 1369 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 IGSF1Q8N6C5 1336 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 ZBTB7CA1YPR0 619 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 PLIN1O60240 522 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 AVPP01185 164 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 VAC14Q08AM6 782 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 NBPF20Q3BBV1 942 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 TSR2Q969E8 191 aaKnown RBP8.1□□□□□ -1.11
PTPRM-213ENST00000580949 RTL1A6NKG5 1358 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 KDRP35968 1356 aa8.1□□□□□ -1.11
PTPRM-213ENST00000580949 SLIT3O75094 1523 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 SOS2Q07890 1332 aaPredicted RBP8.09□□□□□ -1.11
PTPRM-213ENST00000580949 IL16Q14005 1332 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 KIF1AQ12756 1690 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 BCAR3O75815 825 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 SOX11P35716 441 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 ZC3H6P61129 1189 aaKnown RBP8.09□□□□□ -1.11
PTPRM-213ENST00000580949 MTHFSDQ2M296 383 aaKnown RBP8.09□□□□□ -1.11
PTPRM-213ENST00000580949 NBPF6Q5VWK0 638 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 ERICH6BQ5W0A0 696 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 FNBP4Q8N3X1 1017 aaPredicted RBP8.09□□□□□ -1.11
PTPRM-213ENST00000580949 USHBP1Q8N6Y0 703 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 NBPF4Q96M43 638 aa8.09□□□□□ -1.11
PTPRM-213ENST00000580949 KCTD15Q96SI1 283 aaPredicted RBP8.09□□□□□ -1.11
PTPRM-213ENST00000580949 MED1Q15648 1581 aaPredicted RBP8.09□□□□□ -1.11
PTPRM-213ENST00000580949 FANCIQ9NVI1 1328 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 FAM83GA6ND36 823 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 ESPNB1AK53 854 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 NEFMP07197 916 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 ZNF853P0CG23 659 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 FSHRP23945 695 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 NNTQ13423 1086 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 DCTN1Q14203 1278 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 C20orf194Q5TEA3 1177 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 LRRC59Q96AG4 307 aaKnown RBP8.08□□□□□ -1.12
PTPRM-213ENST00000580949 MYH16Q9H6N6 1097 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 TNS3Q68CZ2 1445 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 RGPD1P0DJD0 1748 aa8.08□□□□□ -1.12
PTPRM-213ENST00000580949 RARSP54136 660 aaKnown RBP8.07□□□□□ -1.12
PTPRM-213ENST00000580949 EXOSC9Q06265 439 aaKnown RBP8.07□□□□□ -1.12
PTPRM-213ENST00000580949 SEPT12Q8IYM1 358 aa8.07□□□□□ -1.12
PTPRM-213ENST00000580949 EXOC6Q8TAG9 804 aa8.07□□□□□ -1.12
PTPRM-213ENST00000580949 HPS1Q92902 700 aa8.07□□□□□ -1.12
PTPRM-213ENST00000580949 PPP4R2Q9NY27 417 aa8.07□□□□□ -1.12
PTPRM-213ENST00000580949 ALS2Q96Q42 1657 aa8.07□□□□□ -1.12
PTPRM-213ENST00000580949 LTBP4Q8N2S1 1624 aa8.07□□□□□ -1.12
PTPRM-213ENST00000580949 INTS6LQ5JSJ4 861 aaKnown RBP8.06□□□□□ -1.12
PTPRM-213ENST00000580949 Q6ZNB5 142 aa8.06□□□□□ -1.12
PTPRM-213ENST00000580949 ANKRD24Q8TF21 1146 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms