RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 BRPF1P55201 1214 aaPredicted RBP24.58■■□□□ 1.53
SS18-208ENST00000577751 GRAPQ13588 217 aa24.58■■□□□ 1.53
SS18-208ENST00000577751 GRAPLQ8TC17 118 aaPredicted RBP24.58■■□□□ 1.53
SS18-208ENST00000577751 BCL2L13Q9BXK5 485 aa24.58■■□□□ 1.53
SS18-208ENST00000577751 CASP7P55210 303 aa24.57■■□□□ 1.52
SS18-208ENST00000577751 ATP6V0A2Q9Y487 856 aa24.57■■□□□ 1.52
SS18-208ENST00000577751 MYH3P11055 1940 aa24.57■■□□□ 1.52
SS18-208ENST00000577751 FKBP4Q02790 459 aaKnown RBP eCLIP24.56■■□□□ 1.52
SS18-208ENST00000577751 GRIPAP1Q4V328 841 aa24.56■■□□□ 1.52
SS18-208ENST00000577751 SMC4Q9NTJ3 1288 aa24.56■■□□□ 1.52
SS18-208ENST00000577751 RARSP54136 660 aaKnown RBP24.55■■□□□ 1.52
SS18-208ENST00000577751 UBE3BQ7Z3V4 1068 aa24.55■■□□□ 1.52
SS18-208ENST00000577751 SLC51AQ86UW1 340 aa24.55■■□□□ 1.52
SS18-208ENST00000577751 SP8Q8IXZ3 490 aa24.55■■□□□ 1.52
SS18-208ENST00000577751 COL4A1P02462 1669 aa24.55■■□□□ 1.52
SS18-208ENST00000577751 ZC3H4Q9UPT8 1303 aaKnown RBP24.55■■□□□ 1.52
SS18-208ENST00000577751 CELF1Q92879 486 aaKnown RBP24.54■■□□□ 1.52
SS18-208ENST00000577751 PSMD1Q99460 953 aa24.54■■□□□ 1.52
SS18-208ENST00000577751 PLA2G12BQ9BX93 195 aa24.54■■□□□ 1.52
SS18-208ENST00000577751 TIAM2Q8IVF5 1701 aa24.53■■□□□ 1.52
SS18-208ENST00000577751 ALDH1L1O75891 902 aa24.53■■□□□ 1.52
SS18-208ENST00000577751 CCDC152Q4G0S7 254 aa24.53■■□□□ 1.52
SS18-208ENST00000577751 SLC4A10Q6U841 1118 aa24.53■■□□□ 1.52
SS18-208ENST00000577751 TMC4Q7Z404 712 aa24.53■■□□□ 1.52
SS18-208ENST00000577751 LRRC37AA6NMS7 1700 aa24.52■■□□□ 1.52
SS18-208ENST00000577751 CTSWP56202 376 aa24.52■■□□□ 1.52
SS18-208ENST00000577751 TTLL11Q8NHH1 800 aa24.52■■□□□ 1.52
SS18-208ENST00000577751 SRCIN1Q9C0H9 1055 aa24.52■■□□□ 1.52
SS18-208ENST00000577751 SEC31BQ9NQW1 1179 aa24.51■■□□□ 1.51
SS18-208ENST00000577751 RPS8P62241 208 aaKnown RBP24.5■■□□□ 1.51
SS18-208ENST00000577751 TMX4Q9H1E5 349 aaPredicted RBP24.5■■□□□ 1.51
SS18-208ENST00000577751 GRM8O00222 908 aa24.49■■□□□ 1.51
SS18-208ENST00000577751 ZNF277Q9NRM2 450 aaPredicted RBP24.49■■□□□ 1.51
SS18-208ENST00000577751 NOB1Q9ULX3 412 aaKnown RBP24.49■■□□□ 1.51
SS18-208ENST00000577751 RTL9Q8NET4 1388 aa24.49■■□□□ 1.51
SS18-208ENST00000577751 CSF1RP07333 972 aa24.48■■□□□ 1.51
SS18-208ENST00000577751 CCDC85AQ96PX6 553 aaPredicted RBP24.48■■□□□ 1.51
SS18-208ENST00000577751 GPBP1L1Q9HC44 474 aaPredicted RBP24.48■■□□□ 1.51
SS18-208ENST00000577751 IARSP41252 1262 aaKnown RBP24.47■■□□□ 1.51
SS18-208ENST00000577751 ZNF526Q8TF50 670 aaPredicted RBP24.47■■□□□ 1.51
SS18-208ENST00000577751 RTFDC1Q9BY42 306 aaPredicted RBP24.47■■□□□ 1.51
SS18-208ENST00000577751 GREM2Q9H772 168 aa24.47■■□□□ 1.51
SS18-208ENST00000577751 UTYO14607 1347 aa24.46■■□□□ 1.51
SS18-208ENST00000577751 MPNDQ8N594 471 aa24.46■■□□□ 1.51
SS18-208ENST00000577751 ARHGAP45Q92619 1136 aa24.46■■□□□ 1.51
SS18-208ENST00000577751 C9orf78Q9NZ63 289 aaPredicted RBP24.46■■□□□ 1.51
SS18-208ENST00000577751 KIF16BQ96L93 1317 aa24.45■■□□□ 1.5
SS18-208ENST00000577751 FOXO4P98177 505 aa24.45■■□□□ 1.5
SS18-208ENST00000577751 VPS33BQ9H267 617 aa24.45■■□□□ 1.5
SS18-208ENST00000577751 DPP8Q6V1X1 898 aaPredicted RBP24.44■■□□□ 1.5
SS18-208ENST00000577751 API5Q9BZZ5 524 aaKnown RBP24.44■■□□□ 1.5
SS18-208ENST00000577751 DUOX1Q9NRD9 1551 aa24.44■■□□□ 1.5
SS18-208ENST00000577751 LTBP1Q14766 1721 aa24.44■■□□□ 1.5
SS18-208ENST00000577751 KDM2BQ8NHM5 1336 aa24.43■■□□□ 1.5
SS18-208ENST00000577751 GLTPD2A6NH11 291 aa24.43■■□□□ 1.5
SS18-208ENST00000577751 BCAR3O75815 825 aa24.43■■□□□ 1.5
SS18-208ENST00000577751 NBPF7P0C2Y1 421 aaPredicted RBP24.43■■□□□ 1.5
SS18-208ENST00000577751 ANKRD18AQ8IVF6 992 aa24.43■■□□□ 1.5
SS18-208ENST00000577751 SUPT20HQ8NEM7 779 aa24.43■■□□□ 1.5
SS18-208ENST00000577751 CDC5LQ99459 802 aaKnown RBP24.43■■□□□ 1.5
SS18-208ENST00000577751 COL4A5P29400 1685 aa24.43■■□□□ 1.5
SS18-208ENST00000577751 EPHA10Q5JZY3 1008 aa24.41■■□□□ 1.5
SS18-208ENST00000577751 KAZALD1Q96I82 304 aa24.41■■□□□ 1.5
SS18-208ENST00000577751 USP44Q9H0E7 712 aa24.41■■□□□ 1.5
SS18-208ENST00000577751 FZD9O00144 591 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 ITGA6P23229 1130 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 CCT4P50991 539 aaKnown RBP24.4■■□□□ 1.5
SS18-208ENST00000577751 GPSM2P81274 684 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 FAM161AQ3B820 660 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 DPY19L2Q6NUT2 758 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 BSDC1Q9NW68 430 aaPredicted RBP24.4■■□□□ 1.5
SS18-208ENST00000577751 PODXL2Q9NZ53 605 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 NSFL1CQ9UNZ2 370 aaKnown RBP24.4■■□□□ 1.5
SS18-208ENST00000577751 SPEF2Q9C093 1822 aa24.4■■□□□ 1.5
SS18-208ENST00000577751 KIF3CO14782 793 aa24.39■■□□□ 1.49
SS18-208ENST00000577751 JDP2Q8WYK2 163 aa24.39■■□□□ 1.49
SS18-208ENST00000577751 NMRK2Q9NPI5 230 aa24.39■■□□□ 1.49
SS18-208ENST00000577751 IPO8O15397 1037 aaKnown RBP24.38■■□□□ 1.49
SS18-208ENST00000577751 KIAA2012Q0VF49 1180 aa24.38■■□□□ 1.49
SS18-208ENST00000577751 AOC3Q16853 763 aa24.38■■□□□ 1.49
SS18-208ENST00000577751 LMBR1LQ6UX01 489 aa24.38■■□□□ 1.49
SS18-208ENST00000577751 LARGE2Q8N3Y3 721 aa24.38■■□□□ 1.49
SS18-208ENST00000577751 SUCLG2Q96I99 432 aa24.38■■□□□ 1.49
SS18-208ENST00000577751 WDR90Q96KV7 1748 aa24.38■■□□□ 1.49
SS18-208ENST00000577751 PPIP5K2O43314 1243 aa24.37■■□□□ 1.49
SS18-208ENST00000577751 POLLQ9UGP5 575 aa24.37■■□□□ 1.49
SS18-208ENST00000577751 ANKRD18BA2A2Z9 1011 aa24.36■■□□□ 1.49
SS18-208ENST00000577751 ATF7IPQ6VMQ6 1270 aa24.36■■□□□ 1.49
SS18-208ENST00000577751 TBC1D16Q8TBP0 767 aa24.36■■□□□ 1.49
SS18-208ENST00000577751 MINPP1Q9UNW1 487 aa24.36■■□□□ 1.49
SS18-208ENST00000577751 DDNO94850 711 aaPredicted RBP24.35■■□□□ 1.49
SS18-208ENST00000577751 TRIM27P14373 513 aa24.35■■□□□ 1.49
SS18-208ENST00000577751 IGHMBP2P38935 993 aaKnown RBP24.35■■□□□ 1.49
SS18-208ENST00000577751 IFIT5Q13325 482 aaKnown RBP24.35■■□□□ 1.49
SS18-208ENST00000577751 RABL6Q3YEC7 729 aaPredicted RBP24.35■■□□□ 1.49
SS18-208ENST00000577751 INTS3Q68E01 1043 aaKnown RBP24.35■■□□□ 1.49
SS18-208ENST00000577751 RRAGCQ9HB90 399 aa24.35■■□□□ 1.49
SS18-208ENST00000577751 ZNF541Q9H0D2 1346 aa24.35■■□□□ 1.49
SS18-208ENST00000577751 POTECB2RU33 542 aa24.34■■□□□ 1.49
SS18-208ENST00000577751 FRAT1Q92837 279 aaPredicted RBP24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms