RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 PLA2G12BQ9BX93 195 aa17.26■□□□□ 0.35
CIITA-210ENST00000575513 VPS33BQ9H267 617 aa17.26■□□□□ 0.35
CIITA-210ENST00000575513 SNED1Q8TER0 1413 aa17.26■□□□□ 0.35
CIITA-210ENST00000575513 FER1L6Q2WGJ9 1857 aa17.25■□□□□ 0.35
CIITA-210ENST00000575513 F6X3S4 739 aa17.25■□□□□ 0.35
CIITA-210ENST00000575513 ALDH1L1O75891 902 aa17.25■□□□□ 0.35
CIITA-210ENST00000575513 OLFM4Q6UX06 510 aa17.25■□□□□ 0.35
CIITA-210ENST00000575513 RPS8P62241 208 aaKnown RBP17.24■□□□□ 0.35
CIITA-210ENST00000575513 SBF1O95248 1867 aa17.24■□□□□ 0.35
CIITA-210ENST00000575513 KDM2BQ8NHM5 1336 aa17.23■□□□□ 0.35
CIITA-210ENST00000575513 CASP7P55210 303 aa17.23■□□□□ 0.35
CIITA-210ENST00000575513 CTSWP56202 376 aa17.23■□□□□ 0.35
CIITA-210ENST00000575513 UBE3BQ7Z3V4 1068 aa17.23■□□□□ 0.35
CIITA-210ENST00000575513 TTLL11Q8NHH1 800 aa17.23■□□□□ 0.35
CIITA-210ENST00000575513 JARID2Q92833 1246 aaPredicted RBP17.23■□□□□ 0.35
CIITA-210ENST00000575513 RTFDC1Q9BY42 306 aaPredicted RBP17.23■□□□□ 0.35
CIITA-210ENST00000575513 ZBED9Q6R2W3 1325 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 DDX60Q8IY21 1712 aaKnown RBP17.22■□□□□ 0.35
CIITA-210ENST00000575513 GLTPD2A6NH11 291 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 IARSP41252 1262 aaKnown RBP17.22■□□□□ 0.35
CIITA-210ENST00000575513 DPY19L2Q6NUT2 758 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 SUPT20HQ8NEM7 779 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 CELF1Q92879 486 aaKnown RBP17.22■□□□□ 0.35
CIITA-210ENST00000575513 SRCIN1Q9C0H9 1055 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 SMC4Q9NTJ3 1288 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 RTL9Q8NET4 1388 aa17.22■□□□□ 0.35
CIITA-210ENST00000575513 RARSP54136 660 aaKnown RBP17.21■□□□□ 0.35
CIITA-210ENST00000575513 MPNDQ8N594 471 aa17.21■□□□□ 0.35
CIITA-210ENST00000575513 ZNF277Q9NRM2 450 aaPredicted RBP17.21■□□□□ 0.35
CIITA-210ENST00000575513 GRM8O00222 908 aa17.2■□□□□ 0.34
CIITA-210ENST00000575513 CSF1RP07333 972 aa17.2■□□□□ 0.34
CIITA-210ENST00000575513 SLC4A10Q6U841 1118 aa17.2■□□□□ 0.34
CIITA-210ENST00000575513 ZNF526Q8TF50 670 aaPredicted RBP17.2■□□□□ 0.34
CIITA-210ENST00000575513 LAMB2P55268 1798 aa17.2■□□□□ 0.34
CIITA-210ENST00000575513 DPP8Q6V1X1 898 aaPredicted RBP17.19■□□□□ 0.34
CIITA-210ENST00000575513 JDP2Q8WYK2 163 aa17.19■□□□□ 0.34
CIITA-210ENST00000575513 ARHGAP45Q92619 1136 aa17.19■□□□□ 0.34
CIITA-210ENST00000575513 CDC5LQ99459 802 aaKnown RBP17.19■□□□□ 0.34
CIITA-210ENST00000575513 BCL2L13Q9BXK5 485 aa17.19■□□□□ 0.34
CIITA-210ENST00000575513 SEC31BQ9NQW1 1179 aa17.19■□□□□ 0.34
CIITA-210ENST00000575513 C9orf78Q9NZ63 289 aaPredicted RBP17.19■□□□□ 0.34
CIITA-210ENST00000575513 CACNA1SQ13698 1873 aa17.18■□□□□ 0.34
CIITA-210ENST00000575513 FZD9O00144 591 aa17.18■□□□□ 0.34
CIITA-210ENST00000575513 ANKRD18AQ8IVF6 992 aa17.18■□□□□ 0.34
CIITA-210ENST00000575513 UTYO14607 1347 aa17.18■□□□□ 0.34
CIITA-210ENST00000575513 KIF3CO14782 793 aa17.17■□□□□ 0.34
CIITA-210ENST00000575513 API5Q9BZZ5 524 aaKnown RBP17.17■□□□□ 0.34
CIITA-210ENST00000575513 GREM2Q9H772 168 aa17.17■□□□□ 0.34
CIITA-210ENST00000575513 BSDC1Q9NW68 430 aaPredicted RBP17.17■□□□□ 0.34
CIITA-210ENST00000575513 PODXL2Q9NZ53 605 aa17.17■□□□□ 0.34
CIITA-210ENST00000575513 NOB1Q9ULX3 412 aaKnown RBP17.17■□□□□ 0.34
CIITA-210ENST00000575513 FOXO4P98177 505 aa17.16■□□□□ 0.34
CIITA-210ENST00000575513 LARGE2Q8N3Y3 721 aa17.16■□□□□ 0.34
CIITA-210ENST00000575513 NSFL1CQ9UNZ2 370 aaKnown RBP17.16■□□□□ 0.34
CIITA-210ENST00000575513 KIF16BQ96L93 1317 aa17.16■□□□□ 0.34
CIITA-210ENST00000575513 DICER1Q9UPY3 1922 aaKnown RBP17.15■□□□□ 0.34
CIITA-210ENST00000575513 IPO8O15397 1037 aaKnown RBP17.15■□□□□ 0.34
CIITA-210ENST00000575513 VEGFAP15692 232 aaPredicted RBP17.15■□□□□ 0.34
CIITA-210ENST00000575513 CCT4P50991 539 aaKnown RBP17.15■□□□□ 0.34
CIITA-210ENST00000575513 KIAA2012Q0VF49 1180 aa17.15■□□□□ 0.34
CIITA-210ENST00000575513 CCDC85AQ96PX6 553 aaPredicted RBP17.15■□□□□ 0.34
CIITA-210ENST00000575513 NMRK2Q9NPI5 230 aa17.15■□□□□ 0.34
CIITA-210ENST00000575513 PPIP5K2O43314 1243 aa17.14■□□□□ 0.33
CIITA-210ENST00000575513 ITGA6P23229 1130 aa17.14■□□□□ 0.33
CIITA-210ENST00000575513 C1QTNF8P60827 252 aa17.14■□□□□ 0.33
CIITA-210ENST00000575513 SLC51AQ86UW1 340 aa17.14■□□□□ 0.33
CIITA-210ENST00000575513 L3MBTL3Q96JM7 780 aaPredicted RBP17.14■□□□□ 0.33
CIITA-210ENST00000575513 RRAGCQ9HB90 399 aa17.14■□□□□ 0.33
CIITA-210ENST00000575513 TOMM70O94826 608 aa17.13■□□□□ 0.33
CIITA-210ENST00000575513 IGHMBP2P38935 993 aaKnown RBP17.13■□□□□ 0.33
CIITA-210ENST00000575513 EIF6P56537 245 aaKnown RBP17.13■□□□□ 0.33
CIITA-210ENST00000575513 GPSM2P81274 684 aa17.13■□□□□ 0.33
CIITA-210ENST00000575513 NIM1KQ8IY84 436 aa17.13■□□□□ 0.33
CIITA-210ENST00000575513 EYA3Q99504 573 aa17.13■□□□□ 0.33
CIITA-210ENST00000575513 CCDC88AQ3V6T2 1871 aa17.13■□□□□ 0.33
CIITA-210ENST00000575513 ANKRD18BA2A2Z9 1011 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 NBPF7P0C2Y1 421 aaPredicted RBP17.12■□□□□ 0.33
CIITA-210ENST00000575513 IFIT5Q13325 482 aaKnown RBP17.12■□□□□ 0.33
CIITA-210ENST00000575513 AOC3Q16853 763 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 WASHC4Q2M389 1173 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 GPC2Q8N158 579 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 TBC1D16Q8TBP0 767 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 USP44Q9H0E7 712 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 ANKIB1Q9P2G1 1089 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 POLLQ9UGP5 575 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 ZNRF3Q9ULT6 936 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 XDHP47989 1333 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 LRRC37AA6NMS7 1700 aa17.12■□□□□ 0.33
CIITA-210ENST00000575513 POTECB2RU33 542 aa17.11■□□□□ 0.33
CIITA-210ENST00000575513 DDNO94850 711 aaPredicted RBP17.11■□□□□ 0.33
CIITA-210ENST00000575513 FAM161AQ3B820 660 aa17.11■□□□□ 0.33
CIITA-210ENST00000575513 LMBR1LQ6UX01 489 aa17.11■□□□□ 0.33
CIITA-210ENST00000575513 MPHOSPH8Q99549 860 aa17.11■□□□□ 0.33
CIITA-210ENST00000575513 GGA1Q9UJY5 639 aa17.11■□□□□ 0.33
CIITA-210ENST00000575513 MINPP1Q9UNW1 487 aa17.11■□□□□ 0.33
CIITA-210ENST00000575513 TIAM2Q8IVF5 1701 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 TAF1P21675 1872 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 IQCA1LA6NCM1 817 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 C6orf229H3BNL8 230 aa17.1■□□□□ 0.33
CIITA-210ENST00000575513 ATP2B4P23634 1241 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms