RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 SPA17Q15506 151 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 NUP88Q99567 741 aaPredicted RBP17.74■□□□□ 0.43
CIITA-204ENST00000570546 SLC26A6Q9BXS9 759 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 SLC39A6Q13433 755 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 MKNK2Q9HBH9 465 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 PRKCSHP14314 528 aaPredicted RBP17.74■□□□□ 0.43
CIITA-204ENST00000570546 TAF3Q5VWG9 929 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 SEC63Q9UGP8 760 aaKnown RBP17.74■□□□□ 0.43
CIITA-204ENST00000570546 KIAA0754O94854 1291 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 RDXP35241 583 aaKnown RBP17.74■□□□□ 0.43
CIITA-204ENST00000570546 NLRP5P59047 1200 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 TYRO3Q06418 890 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 LINS1Q8NG48 757 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 FKBP15Q5T1M5 1219 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 KCNG4Q8TDN1 519 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 MRPS27Q92552 414 aaKnown RBP17.74■□□□□ 0.43
CIITA-204ENST00000570546 ZNF287Q9HBT7 754 aa17.74■□□□□ 0.43
CIITA-204ENST00000570546 TEX13AQ9BXU3 409 aaPredicted RBP17.73■□□□□ 0.43
CIITA-204ENST00000570546 EDC4Q6P2E9 1401 aaKnown RBP17.73■□□□□ 0.43
CIITA-204ENST00000570546 SPDYE4A6NLX3 237 aa17.73■□□□□ 0.43
CIITA-204ENST00000570546 SYKP43405 635 aa17.73■□□□□ 0.43
CIITA-204ENST00000570546 ZFYP08048 801 aaPredicted RBP17.73■□□□□ 0.43
CIITA-204ENST00000570546 CWF19L2Q2TBE0 894 aaKnown RBP17.73■□□□□ 0.43
CIITA-204ENST00000570546 MFSD6Q6ZSS7 791 aa17.73■□□□□ 0.43
CIITA-204ENST00000570546 CENPHQ9H3R5 247 aa17.73■□□□□ 0.43
CIITA-204ENST00000570546 RBSNQ9H1K0 784 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 MAGI2Q86UL8 1455 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 PLXNC1O60486 1568 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 GOLGA6L9A6NEM1 432 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 SKILP12757 684 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 JAKMIP3Q5VZ66 844 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 LMBR1LQ6UX01 489 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 TAF4BQ92750 862 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 RRAGDQ9NQL2 400 aaPredicted RBP17.72■□□□□ 0.43
CIITA-204ENST00000570546 YEATS4O95619 227 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 KANK3Q6NY19 840 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 CRACR2AQ9BSW2 395 aa17.72■□□□□ 0.43
CIITA-204ENST00000570546 DZIP1Q86YF9 867 aaKnown RBP17.71■□□□□ 0.43
CIITA-204ENST00000570546 LRRC59Q96AG4 307 aaKnown RBP17.71■□□□□ 0.43
CIITA-204ENST00000570546 SYT1P21579 422 aa17.71■□□□□ 0.43
CIITA-204ENST00000570546 MAP3K19Q56UN5 1328 aa17.71■□□□□ 0.43
CIITA-204ENST00000570546 AOPEPQ8N6M6 819 aa17.71■□□□□ 0.43
CIITA-204ENST00000570546 RAD50Q92878 1312 aa17.71■□□□□ 0.43
CIITA-204ENST00000570546 CCDC194A0A1B0GVG4 234 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 ALG1Q9BT22 464 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 PAG1Q9NWQ8 432 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 HOXC9P31274 260 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 IL15P40933 162 aaPredicted RBP17.7■□□□□ 0.42
CIITA-204ENST00000570546 RBM5P52756 815 aaKnown RBP eCLIP17.7■□□□□ 0.42
CIITA-204ENST00000570546 CHRNA2Q15822 529 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 CEP170Q5SW79 1584 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 POLR3GO15318 223 aaPredicted RBP17.7■□□□□ 0.42
CIITA-204ENST00000570546 UQCRFS1P1P0C7P4 283 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 MAP9Q49MG5 647 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 SEPT11Q9NVA2 429 aaKnown RBP17.7■□□□□ 0.42
CIITA-204ENST00000570546 CHL1O00533 1208 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 UBASH3AP57075 661 aa17.7■□□□□ 0.42
CIITA-204ENST00000570546 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.7■□□□□ 0.42
CIITA-204ENST00000570546 TRPM2O94759 1503 aa17.69■□□□□ 0.42
CIITA-204ENST00000570546 TSG101Q99816 390 aa17.69■□□□□ 0.42
CIITA-204ENST00000570546 MCM3P25205 808 aa17.69■□□□□ 0.42
CIITA-204ENST00000570546 ZBTB43O43298 467 aa17.69■□□□□ 0.42
CIITA-204ENST00000570546 CPA1P15085 419 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 ZMYM3Q14202 1370 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 ZNF444Q8N0Y2 327 aaPredicted RBP17.68■□□□□ 0.42
CIITA-204ENST00000570546 AOX1Q06278 1338 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 ZNF76P36508 570 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 ZSCAN29Q8IWY8 852 aaPredicted RBP17.68■□□□□ 0.42
CIITA-204ENST00000570546 CCDC191Q8NCU4 936 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 RTL1A6NKG5 1358 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 POTEB2H3BUK9 544 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 TFCP2Q12800 502 aa17.68■□□□□ 0.42
CIITA-204ENST00000570546 TRMT2AQ8IZ69 625 aaKnown RBP17.68■□□□□ 0.42
CIITA-204ENST00000570546 BICC1Q9H694 974 aaKnown RBP17.68■□□□□ 0.42
CIITA-204ENST00000570546 NPHP3Q7Z494 1330 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 GNG11P61952 73 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 CACNA2D4Q7Z3S7 1137 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 APOBRQ0VD83 1088 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 PTGS1P23219 599 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 SYNMO15061 1565 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 PRC1O43663 620 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 BMS1Q14692 1282 aaKnown RBP17.67■□□□□ 0.42
CIITA-204ENST00000570546 WTAPQ15007 396 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 ATP2B3Q16720 1220 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 KRT23Q9C075 422 aa17.67■□□□□ 0.42
CIITA-204ENST00000570546 MPHOSPH10O00566 681 aaKnown RBP17.66■□□□□ 0.42
CIITA-204ENST00000570546 PYM1Q9BRP8 204 aaKnown RBP17.66■□□□□ 0.42
CIITA-204ENST00000570546 SNX14Q9Y5W7 946 aa17.66■□□□□ 0.42
CIITA-204ENST00000570546 KIF24Q5T7B8 1368 aa17.66■□□□□ 0.42
CIITA-204ENST00000570546 RNF113AO15541 343 aaKnown RBP17.66■□□□□ 0.42
CIITA-204ENST00000570546 ANKIB1Q9P2G1 1089 aa17.66■□□□□ 0.42
CIITA-204ENST00000570546 FGFR1OPO95684 399 aaKnown RBP17.66■□□□□ 0.42
CIITA-204ENST00000570546 MARCKSP29966 332 aaPredicted RBP17.66■□□□□ 0.42
CIITA-204ENST00000570546 ZNF445P59923 1031 aa17.66■□□□□ 0.42
CIITA-204ENST00000570546 PTPDC1A2A3K4 754 aa17.66■□□□□ 0.42
CIITA-204ENST00000570546 ZPR1O75312 459 aa17.66■□□□□ 0.42
CIITA-204ENST00000570546 USO1O60763 962 aaKnown RBP17.65■□□□□ 0.42
CIITA-204ENST00000570546 SPTLC2O15270 562 aa17.65■□□□□ 0.42
CIITA-204ENST00000570546 TMEM266Q2M3C6 531 aa17.65■□□□□ 0.42
CIITA-204ENST00000570546 CCDC12Q8WUD4 166 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms