RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 SNED1Q8TER0 1413 aa12.5□□□□□ -0.41
CLN6-209ENST00000569336 DUOX1Q9NRD9 1551 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 PTPRCP08575 1304 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 KDM2BQ8NHM5 1336 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 NEURL1BA8MQ27 555 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 RTL5Q5HYW3 569 aaPredicted RBP12.49□□□□□ -0.41
CLN6-209ENST00000569336 C3orf67Q6ZVT6 689 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 LINS1Q8NG48 757 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 C7orf43Q8WVR3 580 aa12.49□□□□□ -0.41
CLN6-209ENST00000569336 COL4A1P02462 1669 aa12.48□□□□□ -0.41
CLN6-209ENST00000569336 PDE8AO60658 829 aa12.48□□□□□ -0.41
CLN6-209ENST00000569336 IGKV5-2P06315 115 aa12.48□□□□□ -0.41
CLN6-209ENST00000569336 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.41
CLN6-209ENST00000569336 GRAPQ13588 217 aa12.48□□□□□ -0.41
CLN6-209ENST00000569336 SF3B3Q15393 1217 aaKnown RBP12.48□□□□□ -0.41
CLN6-209ENST00000569336 TRMT2AQ8IZ69 625 aaKnown RBP12.48□□□□□ -0.41
CLN6-209ENST00000569336 SYNE4Q8N205 404 aa12.48□□□□□ -0.41
CLN6-209ENST00000569336 GRAPLQ8TC17 118 aaPredicted RBP12.48□□□□□ -0.41
CLN6-209ENST00000569336 CDCA7LQ96GN5 454 aa12.48□□□□□ -0.41
CLN6-209ENST00000569336 KIF3CO14782 793 aa12.47□□□□□ -0.41
CLN6-209ENST00000569336 BBOX1O75936 387 aa12.47□□□□□ -0.41
CLN6-209ENST00000569336 SLC34A2O95436 690 aa12.47□□□□□ -0.41
CLN6-209ENST00000569336 CWF19L2Q2TBE0 894 aaKnown RBP12.47□□□□□ -0.41
CLN6-209ENST00000569336 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
CLN6-209ENST00000569336 PSMD1Q99460 953 aa12.47□□□□□ -0.41
CLN6-209ENST00000569336 SCN9AQ15858 1988 aa12.47□□□□□ -0.41
CLN6-209ENST00000569336 ZBED9Q6R2W3 1325 aa12.46□□□□□ -0.41
CLN6-209ENST00000569336 GCKRQ14397 625 aa12.46□□□□□ -0.41
CLN6-209ENST00000569336 SMC4Q9NTJ3 1288 aa12.46□□□□□ -0.41
CLN6-209ENST00000569336 ATP6V0A2Q9Y487 856 aa12.46□□□□□ -0.41
CLN6-209ENST00000569336 ZNF646O15015 1829 aaPredicted RBP12.46□□□□□ -0.42
CLN6-209ENST00000569336 RTL9Q8NET4 1388 aa12.45□□□□□ -0.42
CLN6-209ENST00000569336 KIF16BQ96L93 1317 aa12.45□□□□□ -0.42
CLN6-209ENST00000569336 TRPM7Q96QT4 1865 aa12.45□□□□□ -0.42
CLN6-209ENST00000569336 CTSWP56202 376 aa12.45□□□□□ -0.42
CLN6-209ENST00000569336 UBE3BQ7Z3V4 1068 aa12.45□□□□□ -0.42
CLN6-209ENST00000569336 SUPT20HQ8NEM7 779 aa12.45□□□□□ -0.42
CLN6-209ENST00000569336 ECM29Q5VYK3 1845 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 POLR2AP24928 1970 aaKnown RBP12.44□□□□□ -0.42
CLN6-209ENST00000569336 F6X3S4 739 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 ALDH1L1O75891 902 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 IARSP41252 1262 aaKnown RBP12.44□□□□□ -0.42
CLN6-209ENST00000569336 SLC4A10Q6U841 1118 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 OLFM4Q6UX06 510 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 SP8Q8IXZ3 490 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 MRPL50Q8N5N7 158 aaKnown RBP12.44□□□□□ -0.42
CLN6-209ENST00000569336 SSH1Q8WYL5 1049 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 CDC5LQ99459 802 aaKnown RBP12.44□□□□□ -0.42
CLN6-209ENST00000569336 SRCIN1Q9C0H9 1055 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 ARAP2Q8WZ64 1704 aa12.44□□□□□ -0.42
CLN6-209ENST00000569336 COL4A5P29400 1685 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 H7C1W4 665 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 TOMM70O94826 608 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 HTRA3P83110 453 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 BEND3Q5T5X7 828 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 DPY19L2Q6NUT2 758 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 DPP8Q6V1X1 898 aaPredicted RBP12.43□□□□□ -0.42
CLN6-209ENST00000569336 KLRG1Q96E93 195 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 BCL2L13Q9BXK5 485 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 VPS33BQ9H267 617 aa12.43□□□□□ -0.42
CLN6-209ENST00000569336 ZNF277Q9NRM2 450 aaPredicted RBP12.43□□□□□ -0.42
CLN6-209ENST00000569336 GLTPD2A6NH11 291 aa12.42□□□□□ -0.42
CLN6-209ENST00000569336 GRM8O00222 908 aa12.42□□□□□ -0.42
CLN6-209ENST00000569336 MPNDQ8N594 471 aa12.42□□□□□ -0.42
CLN6-209ENST00000569336 JDP2Q8WYK2 163 aa12.42□□□□□ -0.42
CLN6-209ENST00000569336 PLA2G12BQ9BX93 195 aa12.42□□□□□ -0.42
CLN6-209ENST00000569336 C9orf78Q9NZ63 289 aaPredicted RBP12.42□□□□□ -0.42
CLN6-209ENST00000569336 ADAMTSL1Q8N6G6 1762 aa12.41□□□□□ -0.42
CLN6-209ENST00000569336 BRPF1P55201 1214 aaPredicted RBP12.41□□□□□ -0.42
CLN6-209ENST00000569336 RPS8P62241 208 aaKnown RBP12.41□□□□□ -0.42
CLN6-209ENST00000569336 ANKRD18AQ8IVF6 992 aa12.41□□□□□ -0.42
CLN6-209ENST00000569336 C16orf71Q8IYS4 520 aaPredicted RBP12.41□□□□□ -0.42
CLN6-209ENST00000569336 JARID2Q92833 1246 aaPredicted RBP12.41□□□□□ -0.42
CLN6-209ENST00000569336 CELF1Q92879 486 aaKnown RBP12.41□□□□□ -0.42
CLN6-209ENST00000569336 RTFDC1Q9BY42 306 aaPredicted RBP12.41□□□□□ -0.42
CLN6-209ENST00000569336 PPIP5K2O43314 1243 aa12.4□□□□□ -0.42
CLN6-209ENST00000569336 CASP7P55210 303 aa12.4□□□□□ -0.42
CLN6-209ENST00000569336 LARGE2Q8N3Y3 721 aa12.4□□□□□ -0.42
CLN6-209ENST00000569336 TTLL11Q8NHH1 800 aa12.4□□□□□ -0.42
CLN6-209ENST00000569336 API5Q9BZZ5 524 aaKnown RBP12.4□□□□□ -0.42
CLN6-209ENST00000569336 RARSP54136 660 aaKnown RBP12.39□□□□□ -0.43
CLN6-209ENST00000569336 NIM1KQ8IY84 436 aa12.39□□□□□ -0.43
CLN6-209ENST00000569336 JMYQ8N9B5 988 aa12.39□□□□□ -0.43
CLN6-209ENST00000569336 CCDC85AQ96PX6 553 aaPredicted RBP12.39□□□□□ -0.43
CLN6-209ENST00000569336 GREM2Q9H772 168 aa12.39□□□□□ -0.43
CLN6-209ENST00000569336 NMRK2Q9NPI5 230 aa12.39□□□□□ -0.43
CLN6-209ENST00000569336 SEC31BQ9NQW1 1179 aa12.39□□□□□ -0.43
CLN6-209ENST00000569336 IGHMBP2P38935 993 aaKnown RBP12.38□□□□□ -0.43
CLN6-209ENST00000569336 CCT4P50991 539 aaKnown RBP12.38□□□□□ -0.43
CLN6-209ENST00000569336 EIF6P56537 245 aaKnown RBP12.38□□□□□ -0.43
CLN6-209ENST00000569336 KIAA2012Q0VF49 1180 aa12.38□□□□□ -0.43
CLN6-209ENST00000569336 FAM161AQ3B820 660 aa12.38□□□□□ -0.43
CLN6-209ENST00000569336 EYA3Q99504 573 aa12.38□□□□□ -0.43
CLN6-209ENST00000569336 NSFL1CQ9UNZ2 370 aaKnown RBP12.38□□□□□ -0.43
CLN6-209ENST00000569336 UTYO14607 1347 aa12.37□□□□□ -0.43
CLN6-209ENST00000569336 XDHP47989 1333 aa12.37□□□□□ -0.43
CLN6-209ENST00000569336 ANKRD18BA2A2Z9 1011 aa12.37□□□□□ -0.43
CLN6-209ENST00000569336 IQCA1LA6NCM1 817 aa12.37□□□□□ -0.43
CLN6-209ENST00000569336 FZD9O00144 591 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms