RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 CWC25Q9NXE8 425 aaPredicted RBP23.6■■□□□ 1.37
CLN3-237ENST00000569030 ZNF541Q9H0D2 1346 aa23.59■■□□□ 1.37
CLN3-237ENST00000569030 IGKV5-2P06315 115 aa23.59■■□□□ 1.37
CLN3-237ENST00000569030 FZD9O00144 591 aa23.58■■□□□ 1.37
CLN3-237ENST00000569030 PCCAP05165 728 aaPredicted RBP23.58■■□□□ 1.37
CLN3-237ENST00000569030 MYH16Q9H6N6 1097 aa23.58■■□□□ 1.37
CLN3-237ENST00000569030 SCN4AP35499 1836 aa23.57■■□□□ 1.36
CLN3-237ENST00000569030 LRRC37AA6NMS7 1700 aa23.57■■□□□ 1.36
CLN3-237ENST00000569030 FLIIQ13045 1269 aa23.57■■□□□ 1.36
CLN3-237ENST00000569030 CELF1Q92879 486 aaKnown RBP23.57■■□□□ 1.36
CLN3-237ENST00000569030 TMX4Q9H1E5 349 aaPredicted RBP23.57■■□□□ 1.36
CLN3-237ENST00000569030 FSTL1Q12841 308 aa23.56■■□□□ 1.36
CLN3-237ENST00000569030 JDP2Q8WYK2 163 aa23.56■■□□□ 1.36
CLN3-237ENST00000569030 MYH3P11055 1940 aa23.56■■□□□ 1.36
CLN3-237ENST00000569030 CWF19L2Q2TBE0 894 aaKnown RBP23.55■■□□□ 1.36
CLN3-237ENST00000569030 LARGE2Q8N3Y3 721 aa23.55■■□□□ 1.36
CLN3-237ENST00000569030 MPNDQ8N594 471 aa23.55■■□□□ 1.36
CLN3-237ENST00000569030 RTFDC1Q9BY42 306 aaPredicted RBP23.55■■□□□ 1.36
CLN3-237ENST00000569030 NEXNQ0ZGT2 675 aa23.54■■□□□ 1.36
CLN3-237ENST00000569030 DPP8Q6V1X1 898 aaPredicted RBP23.54■■□□□ 1.36
CLN3-237ENST00000569030 L3MBTL3Q96JM7 780 aaPredicted RBP23.54■■□□□ 1.36
CLN3-237ENST00000569030 NEURL1BA8MQ27 555 aa23.53■■□□□ 1.36
CLN3-237ENST00000569030 PDE8AO60658 829 aa23.53■■□□□ 1.36
CLN3-237ENST00000569030 FKBP5Q13451 457 aaPredicted RBP23.53■■□□□ 1.36
CLN3-237ENST00000569030 AOC3Q16853 763 aa23.53■■□□□ 1.36
CLN3-237ENST00000569030 SMC1BQ8NDV3 1235 aa23.53■■□□□ 1.36
CLN3-237ENST00000569030 SEC31BQ9NQW1 1179 aa23.53■■□□□ 1.36
CLN3-237ENST00000569030 DUOX1Q9NRD9 1551 aa23.52■■□□□ 1.36
CLN3-237ENST00000569030 CCER2I3L3R5 266 aa23.52■■□□□ 1.36
CLN3-237ENST00000569030 PPIP5K2O43314 1243 aa23.52■■□□□ 1.36
CLN3-237ENST00000569030 TMC4Q7Z404 712 aa23.52■■□□□ 1.36
CLN3-237ENST00000569030 CDHR2Q9BYE9 1310 aa23.52■■□□□ 1.36
CLN3-237ENST00000569030 HSP90B1P14625 803 aaKnown RBP23.51■■□□□ 1.35
CLN3-237ENST00000569030 RPS8P62241 208 aaKnown RBP23.51■■□□□ 1.35
CLN3-237ENST00000569030 CCDC85AQ96PX6 553 aaPredicted RBP23.51■■□□□ 1.35
CLN3-237ENST00000569030 POTEIP0CG38 1075 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 POTEJP0CG39 1038 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 APLP1P51693 650 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 GPC2Q8N158 579 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 SUPT20HQ8NEM7 779 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 DNAAF4Q8WXU2 420 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 VPS33BQ9H267 617 aa23.5■■□□□ 1.35
CLN3-237ENST00000569030 H7C1W4 665 aa23.49■■□□□ 1.35
CLN3-237ENST00000569030 EIF6P56537 245 aaKnown RBP23.49■■□□□ 1.35
CLN3-237ENST00000569030 CCDC152Q4G0S7 254 aa23.49■■□□□ 1.35
CLN3-237ENST00000569030 NIM1KQ8IY84 436 aa23.49■■□□□ 1.35
CLN3-237ENST00000569030 TAF1DQ9H5J8 278 aaPredicted RBP23.49■■□□□ 1.35
CLN3-237ENST00000569030 LTBP1Q14766 1721 aa23.49■■□□□ 1.35
CLN3-237ENST00000569030 SPEF2Q9C093 1822 aa23.48■■□□□ 1.35
CLN3-237ENST00000569030 IQCA1LA6NCM1 817 aa23.48■■□□□ 1.35
CLN3-237ENST00000569030 F6X3S4 739 aa23.48■■□□□ 1.35
CLN3-237ENST00000569030 GPSM2P81274 684 aa23.48■■□□□ 1.35
CLN3-237ENST00000569030 GCKRQ14397 625 aa23.48■■□□□ 1.35
CLN3-237ENST00000569030 GJA3Q9Y6H8 435 aa23.48■■□□□ 1.35
CLN3-237ENST00000569030 KIAA2012Q0VF49 1180 aa23.47■■□□□ 1.35
CLN3-237ENST00000569030 UBE3BQ7Z3V4 1068 aa23.47■■□□□ 1.35
CLN3-237ENST00000569030 NSFL1CQ9UNZ2 370 aaKnown RBP23.47■■□□□ 1.35
CLN3-237ENST00000569030 CTSWP56202 376 aa23.46■■□□□ 1.35
CLN3-237ENST00000569030 HTRA3P83110 453 aa23.46■■□□□ 1.35
CLN3-237ENST00000569030 LINS1Q8NG48 757 aa23.46■■□□□ 1.35
CLN3-237ENST00000569030 HACL1Q9UJ83 578 aa23.46■■□□□ 1.35
CLN3-237ENST00000569030 E9PSI1 815 aa23.45■■□□□ 1.34
CLN3-237ENST00000569030 SLFN5Q08AF3 891 aa23.45■■□□□ 1.34
CLN3-237ENST00000569030 TTLL11Q8NHH1 800 aa23.45■■□□□ 1.34
CLN3-237ENST00000569030 CDCA7LQ96GN5 454 aa23.45■■□□□ 1.34
CLN3-237ENST00000569030 POLLQ9UGP5 575 aa23.45■■□□□ 1.34
CLN3-237ENST00000569030 ZNRF3Q9ULT6 936 aa23.45■■□□□ 1.34
CLN3-237ENST00000569030 EPHX2P34913 555 aa23.44■■□□□ 1.34
CLN3-237ENST00000569030 CASP7P55210 303 aa23.44■■□□□ 1.34
CLN3-237ENST00000569030 DNAJC5GQ8N7S2 189 aa23.44■■□□□ 1.34
CLN3-237ENST00000569030 ADAMTSL1Q8N6G6 1762 aa23.43■■□□□ 1.34
CLN3-237ENST00000569030 CXCL9Q07325 125 aa23.43■■□□□ 1.34
CLN3-237ENST00000569030 CHADLQ6NUI6 762 aa23.43■■□□□ 1.34
CLN3-237ENST00000569030 GREM2Q9H772 168 aa23.43■■□□□ 1.34
CLN3-237ENST00000569030 C6orf229H3BNL8 230 aa23.42■■□□□ 1.34
CLN3-237ENST00000569030 WASHC4Q2M389 1173 aa23.42■■□□□ 1.34
CLN3-237ENST00000569030 EAPPQ56P03 285 aaPredicted RBP23.42■■□□□ 1.34
CLN3-237ENST00000569030 BEND3Q5T5X7 828 aa23.42■■□□□ 1.34
CLN3-237ENST00000569030 GPR101Q96P66 508 aaPredicted RBP23.42■■□□□ 1.34
CLN3-237ENST00000569030 YDJCA8MPS7 323 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 RIMBP2O15034 1052 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 SCNN1DP51172 638 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 LDHDQ86WU2 507 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 ANKRD18AQ8IVF6 992 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 TBC1D16Q8TBP0 767 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 PLA2G12BQ9BX93 195 aa23.41■■□□□ 1.34
CLN3-237ENST00000569030 EPS15P42566 896 aa23.4■■□□□ 1.34
CLN3-237ENST00000569030 PODXL2Q9NZ53 605 aa23.4■■□□□ 1.34
CLN3-237ENST00000569030 RTL9Q8NET4 1388 aa23.4■■□□□ 1.34
CLN3-237ENST00000569030 RAD17O75943 681 aa23.39■■□□□ 1.33
CLN3-237ENST00000569030 TRMT2AQ8IZ69 625 aaKnown RBP23.39■■□□□ 1.33
CLN3-237ENST00000569030 MRPL50Q8N5N7 158 aaKnown RBP23.39■■□□□ 1.33
CLN3-237ENST00000569030 MIER1Q8N108 512 aa23.38■■□□□ 1.33
CLN3-237ENST00000569030 CDC5LQ99459 802 aaKnown RBP23.38■■□□□ 1.33
CLN3-237ENST00000569030 DBNDD1Q9H9R9 158 aa23.38■■□□□ 1.33
CLN3-237ENST00000569030 ANKIB1Q9P2G1 1089 aa23.38■■□□□ 1.33
CLN3-237ENST00000569030 CLEC11AQ9Y240 323 aa23.38■■□□□ 1.33
CLN3-237ENST00000569030 SCN9AQ15858 1988 aa23.38■■□□□ 1.33
CLN3-237ENST00000569030 CSF1RP07333 972 aa23.37■■□□□ 1.33
CLN3-237ENST00000569030 LMOD1P29536 600 aaPredicted RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms