RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TRIM28Q13263 835 aaKnown RBP20.84■□□□□ 0.93
CLN3-229ENST00000567963 MAP1SQ66K74 1059 aaPredicted RBP20.84■□□□□ 0.93
CLN3-229ENST00000567963 MKRN1Q9UHC7 482 aaKnown RBP20.84■□□□□ 0.93
CLN3-229ENST00000567963 LTBP1Q14766 1721 aa20.83■□□□□ 0.93
CLN3-229ENST00000567963 TMEM88BA6NKF7 163 aa20.83■□□□□ 0.93
CLN3-229ENST00000567963 EPS15P42566 896 aa20.83■□□□□ 0.93
CLN3-229ENST00000567963 COL13A1Q5TAT6 717 aaPredicted RBP20.83■□□□□ 0.93
CLN3-229ENST00000567963 HSPA1AP0DMV8 641 aaKnown RBP20.82■□□□□ 0.92
CLN3-229ENST00000567963 HSPA1BP0DMV9 641 aaKnown RBP20.82■□□□□ 0.92
CLN3-229ENST00000567963 SF3B3Q15393 1217 aaKnown RBP20.82■□□□□ 0.92
CLN3-229ENST00000567963 TMC4Q7Z404 712 aa20.82■□□□□ 0.92
CLN3-229ENST00000567963 RIC3Q7Z5B4 369 aa20.82■□□□□ 0.92
CLN3-229ENST00000567963 PHAXQ9H814 394 aaKnown RBP20.82■□□□□ 0.92
CLN3-229ENST00000567963 ZNRF3Q9ULT6 936 aa20.82■□□□□ 0.92
CLN3-229ENST00000567963 C8orf58Q8NAV2 365 aa20.81■□□□□ 0.92
CLN3-229ENST00000567963 CNTNAP1P78357 1384 aa20.81■□□□□ 0.92
CLN3-229ENST00000567963 CXCL9Q07325 125 aa20.81■□□□□ 0.92
CLN3-229ENST00000567963 KIAA2012Q0VF49 1180 aa20.81■□□□□ 0.92
CLN3-229ENST00000567963 CCDC184Q52MB2 194 aa20.81■□□□□ 0.92
CLN3-229ENST00000567963 RTL5Q5HYW3 569 aaPredicted RBP20.81■□□□□ 0.92
CLN3-229ENST00000567963 GOLGA2Q08379 1002 aa20.8■□□□□ 0.92
CLN3-229ENST00000567963 USP50Q70EL3 339 aaPredicted RBP20.8■□□□□ 0.92
CLN3-229ENST00000567963 IRS4O14654 1257 aaPredicted RBP20.79■□□□□ 0.92
CLN3-229ENST00000567963 CELF1Q92879 486 aaKnown RBP20.79■□□□□ 0.92
CLN3-229ENST00000567963 ZBTB38Q8NAP3 1195 aaPredicted RBP20.78■□□□□ 0.92
CLN3-229ENST00000567963 GPRC5DQ9NZD1 345 aa20.78■□□□□ 0.92
CLN3-229ENST00000567963 LRRC37AA6NMS7 1700 aa20.78■□□□□ 0.92
CLN3-229ENST00000567963 CCDC30Q5VVM6 783 aa20.77■□□□□ 0.92
CLN3-229ENST00000567963 CHMP4AQ9BY43 222 aa20.77■□□□□ 0.92
CLN3-229ENST00000567963 CIAPIN1Q6FI81 312 aa20.76■□□□□ 0.91
CLN3-229ENST00000567963 TSPYL6Q8N831 410 aa20.76■□□□□ 0.91
CLN3-229ENST00000567963 MYD88Q99836 296 aa20.76■□□□□ 0.91
CLN3-229ENST00000567963 ADARB2Q9NS39 739 aaKnown RBP20.76■□□□□ 0.91
CLN3-229ENST00000567963 NSFL1CQ9UNZ2 370 aaKnown RBP20.76■□□□□ 0.91
CLN3-229ENST00000567963 DUOX1Q9NRD9 1551 aa20.76■□□□□ 0.91
CLN3-229ENST00000567963 VEGFBP49765 207 aa20.75■□□□□ 0.91
CLN3-229ENST00000567963 CCDC191Q8NCU4 936 aa20.75■□□□□ 0.91
CLN3-229ENST00000567963 RAD17O75943 681 aa20.75■□□□□ 0.91
CLN3-229ENST00000567963 GMPSP49915 693 aaPredicted RBP20.75■□□□□ 0.91
CLN3-229ENST00000567963 RPS8P62241 208 aaKnown RBP20.75■□□□□ 0.91
CLN3-229ENST00000567963 TNIP1Q15025 636 aa20.75■□□□□ 0.91
CLN3-229ENST00000567963 CCDC27Q2M243 656 aa20.75■□□□□ 0.91
CLN3-229ENST00000567963 WASHC4Q2M389 1173 aa20.75■□□□□ 0.91
CLN3-229ENST00000567963 COL4A1P02462 1669 aa20.74■□□□□ 0.91
CLN3-229ENST00000567963 RASSF10A6NK89 507 aa20.74■□□□□ 0.91
CLN3-229ENST00000567963 YDJCA8MPS7 323 aa20.74■□□□□ 0.91
CLN3-229ENST00000567963 DDX58O95786 925 aaKnown RBP20.74■□□□□ 0.91
CLN3-229ENST00000567963 HSP90B1P14625 803 aaKnown RBP20.74■□□□□ 0.91
CLN3-229ENST00000567963 DEFB115Q30KQ5 88 aa20.74■□□□□ 0.91
CLN3-229ENST00000567963 METTL22Q9BUU2 404 aaPredicted RBP20.74■□□□□ 0.91
CLN3-229ENST00000567963 PCCAP05165 728 aaPredicted RBP20.73■□□□□ 0.91
CLN3-229ENST00000567963 FMR1Q06787 632 aaKnown RBP eCLIP20.73■□□□□ 0.91
CLN3-229ENST00000567963 WWC1Q8IX03 1113 aa20.73■□□□□ 0.91
CLN3-229ENST00000567963 TSR2Q969E8 191 aaKnown RBP20.73■□□□□ 0.91
CLN3-229ENST00000567963 POLLQ9UGP5 575 aa20.73■□□□□ 0.91
CLN3-229ENST00000567963 GPSM2P81274 684 aa20.72■□□□□ 0.91
CLN3-229ENST00000567963 BCL2L13Q9BXK5 485 aa20.72■□□□□ 0.91
CLN3-229ENST00000567963 CDHR2Q9BYE9 1310 aa20.72■□□□□ 0.91
CLN3-229ENST00000567963 CWC25Q9NXE8 425 aaPredicted RBP20.72■□□□□ 0.91
CLN3-229ENST00000567963 C6orf229H3BNL8 230 aa20.71■□□□□ 0.91
CLN3-229ENST00000567963 ZEB1P37275 1124 aaPredicted RBP20.71■□□□□ 0.91
CLN3-229ENST00000567963 SEC31BQ9NQW1 1179 aa20.71■□□□□ 0.91
CLN3-229ENST00000567963 ABT1Q9ULW3 272 aaKnown RBP20.71■□□□□ 0.91
CLN3-229ENST00000567963 MAP3K2Q9Y2U5 619 aa20.71■□□□□ 0.91
CLN3-229ENST00000567963 PDE8AO60658 829 aa20.7■□□□□ 0.9
CLN3-229ENST00000567963 TNS4Q8IZW8 715 aa20.7■□□□□ 0.9
CLN3-229ENST00000567963 PGAP2Q9UHJ9 254 aa20.7■□□□□ 0.9
CLN3-229ENST00000567963 TRAF5O00463 557 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 RIMBP2O15034 1052 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 CCDC152Q4G0S7 254 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 NCBP3Q53F19 620 aaKnown RBP20.69■□□□□ 0.9
CLN3-229ENST00000567963 CST9Q5W186 159 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 KSR2Q6VAB6 950 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 TBC1D16Q8TBP0 767 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 JARID2Q92833 1246 aaPredicted RBP20.69■□□□□ 0.9
CLN3-229ENST00000567963 DBNDD1Q9H9R9 158 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 CNOT7Q9UIV1 285 aaKnown RBP20.69■□□□□ 0.9
CLN3-229ENST00000567963 PI4KAP2A4QPH2 592 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 HIRAP54198 1017 aaPredicted RBP20.69■□□□□ 0.9
CLN3-229ENST00000567963 PI4KAP1Q8N8J0 262 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 EYA3Q99504 573 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 STK31Q9BXU1 1019 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 PODXL2Q9NZ53 605 aa20.69■□□□□ 0.9
CLN3-229ENST00000567963 TRPM7Q96QT4 1865 aa20.68■□□□□ 0.9
CLN3-229ENST00000567963 WDR33Q9C0J8 1336 aaKnown RBP20.68■□□□□ 0.9
CLN3-229ENST00000567963 PSMD14O00487 310 aa20.68■□□□□ 0.9
CLN3-229ENST00000567963 FOXN1O15353 648 aa20.68■□□□□ 0.9
CLN3-229ENST00000567963 TWISTNBQ3B726 338 aaPredicted RBP20.68■□□□□ 0.9
CLN3-229ENST00000567963 ZC3H15Q8WU90 426 aaKnown RBP20.68■□□□□ 0.9
CLN3-229ENST00000567963 MRS2Q9HD23 443 aa20.68■□□□□ 0.9
CLN3-229ENST00000567963 ZBTB12Q9Y330 459 aaPredicted RBP20.68■□□□□ 0.9
CLN3-229ENST00000567963 IL16Q14005 1332 aa20.67■□□□□ 0.9
CLN3-229ENST00000567963 H7C1D1 291 aa20.67■□□□□ 0.9
CLN3-229ENST00000567963 IGKV5-2P06315 115 aa20.67■□□□□ 0.9
CLN3-229ENST00000567963 DPF2Q92785 391 aa20.67■□□□□ 0.9
CLN3-229ENST00000567963 SHTN1A0MZ66 631 aa20.66■□□□□ 0.9
CLN3-229ENST00000567963 ECE2O60344 883 aa20.66■□□□□ 0.9
CLN3-229ENST00000567963 DOK7Q18PE1 504 aa20.66■□□□□ 0.9
CLN3-229ENST00000567963 MICALL2Q8IY33 904 aa20.66■□□□□ 0.9
CLN3-229ENST00000567963 TRPM4Q8TD43 1214 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms