RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 F6X3S4 739 aa12.65□□□□□ -0.38
CDH1-206ENST00000564676 PPEF1O14829 653 aaPredicted RBP12.65□□□□□ -0.38
CDH1-206ENST00000564676 BBOX1O75936 387 aa12.65□□□□□ -0.38
CDH1-206ENST00000564676 SF3B3Q15393 1217 aaKnown RBP12.65□□□□□ -0.38
CDH1-206ENST00000564676 CC2D2BQ6DHV5 1058 aa12.65□□□□□ -0.38
CDH1-206ENST00000564676 MRPL50Q8N5N7 158 aaKnown RBP12.65□□□□□ -0.38
CDH1-206ENST00000564676 GPBP1L1Q9HC44 474 aaPredicted RBP12.65□□□□□ -0.38
CDH1-206ENST00000564676 ABCC4O15439 1325 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 CCDC88AQ3V6T2 1871 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 PDE8AO60658 829 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 PRELPP51888 382 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 GRAPQ13588 217 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 SLC4A10Q6U841 1118 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 LINS1Q8NG48 757 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 GRAPLQ8TC17 118 aaPredicted RBP12.64□□□□□ -0.39
CDH1-206ENST00000564676 SSH1Q8WYL5 1049 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 BCL2L13Q9BXK5 485 aa12.64□□□□□ -0.39
CDH1-206ENST00000564676 LTBP3Q9NS15 1303 aa12.63□□□□□ -0.39
CDH1-206ENST00000564676 FER1L6Q2WGJ9 1857 aa12.63□□□□□ -0.39
CDH1-206ENST00000564676 CT47B1P0C2W7 299 aaPredicted RBP12.63□□□□□ -0.39
CDH1-206ENST00000564676 FKBP4Q02790 459 aaKnown RBP eCLIP12.63□□□□□ -0.39
CDH1-206ENST00000564676 GCKRQ14397 625 aa12.63□□□□□ -0.39
CDH1-206ENST00000564676 SMC4Q9NTJ3 1288 aa12.63□□□□□ -0.39
CDH1-206ENST00000564676 ATP6V0A2Q9Y487 856 aa12.63□□□□□ -0.39
CDH1-206ENST00000564676 LAMB2P55268 1798 aa12.63□□□□□ -0.39
CDH1-206ENST00000564676 CDHR2Q9BYE9 1310 aa12.62□□□□□ -0.39
CDH1-206ENST00000564676 H7C1W4 665 aa12.62□□□□□ -0.39
CDH1-206ENST00000564676 ALDH1L2Q3SY69 923 aa12.62□□□□□ -0.39
CDH1-206ENST00000564676 CCDC152Q4G0S7 254 aa12.62□□□□□ -0.39
CDH1-206ENST00000564676 GRIPAP1Q4V328 841 aa12.62□□□□□ -0.39
CDH1-206ENST00000564676 UBE3BQ7Z3V4 1068 aa12.62□□□□□ -0.39
CDH1-206ENST00000564676 CCDC85AQ96PX6 553 aaPredicted RBP12.62□□□□□ -0.39
CDH1-206ENST00000564676 ZNF277Q9NRM2 450 aaPredicted RBP12.62□□□□□ -0.39
CDH1-206ENST00000564676 DDX60Q8IY21 1712 aaKnown RBP12.62□□□□□ -0.39
CDH1-206ENST00000564676 BEND3Q5T5X7 828 aa12.61□□□□□ -0.39
CDH1-206ENST00000564676 TMC4Q7Z404 712 aa12.61□□□□□ -0.39
CDH1-206ENST00000564676 SP8Q8IXZ3 490 aa12.61□□□□□ -0.39
CDH1-206ENST00000564676 CELF1Q92879 486 aaKnown RBP12.61□□□□□ -0.39
CDH1-206ENST00000564676 PTPRCP08575 1304 aa12.61□□□□□ -0.39
CDH1-206ENST00000564676 ZC3H4Q9UPT8 1303 aaKnown RBP12.61□□□□□ -0.39
CDH1-206ENST00000564676 TAF1P21675 1872 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 CTSWP56202 376 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 RPS8P62241 208 aaKnown RBP12.6□□□□□ -0.39
CDH1-206ENST00000564676 SLC51AQ86UW1 340 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 PSMD1Q99460 953 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 SRCIN1Q9C0H9 1055 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 SEC31BQ9NQW1 1179 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 KDM2BQ8NHM5 1336 aa12.6□□□□□ -0.39
CDH1-206ENST00000564676 ALDH1L1O75891 902 aa12.59□□□□□ -0.39
CDH1-206ENST00000564676 IARSP41252 1262 aaKnown RBP12.59□□□□□ -0.39
CDH1-206ENST00000564676 DPY19L2Q6NUT2 758 aa12.59□□□□□ -0.39
CDH1-206ENST00000564676 DPP8Q6V1X1 898 aaPredicted RBP12.59□□□□□ -0.39
CDH1-206ENST00000564676 MPNDQ8N594 471 aa12.59□□□□□ -0.39
CDH1-206ENST00000564676 C9orf78Q9NZ63 289 aaPredicted RBP12.59□□□□□ -0.39
CDH1-206ENST00000564676 GLTPD2A6NH11 291 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 CASP7P55210 303 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 SUPT20HQ8NEM7 779 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 TTLL11Q8NHH1 800 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 JDP2Q8WYK2 163 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 CDC5LQ99459 802 aaKnown RBP12.58□□□□□ -0.4
CDH1-206ENST00000564676 PLA2G12BQ9BX93 195 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 DICER1Q9UPY3 1922 aaKnown RBP12.58□□□□□ -0.4
CDH1-206ENST00000564676 ZBED9Q6R2W3 1325 aa12.58□□□□□ -0.4
CDH1-206ENST00000564676 GRM8O00222 908 aa12.57□□□□□ -0.4
CDH1-206ENST00000564676 RARSP54136 660 aaKnown RBP12.57□□□□□ -0.4
CDH1-206ENST00000564676 ANKRD18AQ8IVF6 992 aa12.57□□□□□ -0.4
CDH1-206ENST00000564676 LARGE2Q8N3Y3 721 aa12.57□□□□□ -0.4
CDH1-206ENST00000564676 GREM2Q9H772 168 aa12.57□□□□□ -0.4
CDH1-206ENST00000564676 RRAGCQ9HB90 399 aa12.57□□□□□ -0.4
CDH1-206ENST00000564676 NMRK2Q9NPI5 230 aa12.57□□□□□ -0.4
CDH1-206ENST00000564676 NOB1Q9ULX3 412 aaKnown RBP12.57□□□□□ -0.4
CDH1-206ENST00000564676 NSFL1CQ9UNZ2 370 aaKnown RBP12.57□□□□□ -0.4
CDH1-206ENST00000564676 PPIP5K2O43314 1243 aa12.56□□□□□ -0.4
CDH1-206ENST00000564676 CHMP3Q9Y3E7 222 aa12.56□□□□□ -0.4
CDH1-206ENST00000564676 MYH3P11055 1940 aa12.56□□□□□ -0.4
CDH1-206ENST00000564676 SNED1Q8TER0 1413 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 KIF3CO14782 793 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 IGHMBP2P38935 993 aaKnown RBP12.55□□□□□ -0.4
CDH1-206ENST00000564676 BRPF1P55201 1214 aaPredicted RBP12.55□□□□□ -0.4
CDH1-206ENST00000564676 GPSM2P81274 684 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 AOC3Q16853 763 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 NIM1KQ8IY84 436 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 RTFDC1Q9BY42 306 aaPredicted RBP12.55□□□□□ -0.4
CDH1-206ENST00000564676 API5Q9BZZ5 524 aaKnown RBP12.55□□□□□ -0.4
CDH1-206ENST00000564676 VPS33BQ9H267 617 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 ANKIB1Q9P2G1 1089 aa12.55□□□□□ -0.4
CDH1-206ENST00000564676 TIAM2Q8IVF5 1701 aa12.54□□□□□ -0.4
CDH1-206ENST00000564676 C6orf229H3BNL8 230 aa12.54□□□□□ -0.4
CDH1-206ENST00000564676 DDNO94850 711 aaPredicted RBP12.54□□□□□ -0.4
CDH1-206ENST00000564676 CSF1RP07333 972 aa12.54□□□□□ -0.4
CDH1-206ENST00000564676 ITGA6P23229 1130 aa12.54□□□□□ -0.4
CDH1-206ENST00000564676 EIF6P56537 245 aaKnown RBP12.54□□□□□ -0.4
CDH1-206ENST00000564676 FAM161AQ3B820 660 aa12.54□□□□□ -0.4
CDH1-206ENST00000564676 C16orf71Q8IYS4 520 aaPredicted RBP12.54□□□□□ -0.4
CDH1-206ENST00000564676 RTL9Q8NET4 1388 aa12.54□□□□□ -0.4
CDH1-206ENST00000564676 ANKRD18BA2A2Z9 1011 aa12.53□□□□□ -0.4
CDH1-206ENST00000564676 FZD9O00144 591 aa12.53□□□□□ -0.4
CDH1-206ENST00000564676 IPO8O15397 1037 aaKnown RBP12.53□□□□□ -0.4
CDH1-206ENST00000564676 NBPF7P0C2Y1 421 aaPredicted RBP12.53□□□□□ -0.4
CDH1-206ENST00000564676 VEGFAP15692 232 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms