RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ADAMTSL1Q8N6G6 1762 aa21.98■■□□□ 1.11
CLN3-211ENST00000564091 ATP5J2-PTCD1G3V325 749 aa21.98■■□□□ 1.11
CLN3-211ENST00000564091 CTCFP49711 727 aaPredicted RBP21.98■■□□□ 1.11
CLN3-211ENST00000564091 GMPSP49915 693 aaPredicted RBP21.98■■□□□ 1.11
CLN3-211ENST00000564091 ANKRD13DQ6ZTN6 518 aa21.98■■□□□ 1.11
CLN3-211ENST00000564091 PLBD2Q8NHP8 589 aa21.98■■□□□ 1.11
CLN3-211ENST00000564091 RAD17O75943 681 aa21.97■■□□□ 1.11
CLN3-211ENST00000564091 KIAA2012Q0VF49 1180 aa21.97■■□□□ 1.11
CLN3-211ENST00000564091 FAM89AQ96GI7 184 aa21.97■■□□□ 1.11
CLN3-211ENST00000564091 ADARB2Q9NS39 739 aaKnown RBP21.97■■□□□ 1.11
CLN3-211ENST00000564091 WDR33Q9C0J8 1336 aaKnown RBP21.97■■□□□ 1.11
CLN3-211ENST00000564091 LTBP1Q14766 1721 aa21.97■■□□□ 1.11
CLN3-211ENST00000564091 DUSP27Q5VZP5 1158 aa21.96■■□□□ 1.11
CLN3-211ENST00000564091 CST9Q5W186 159 aa21.96■■□□□ 1.11
CLN3-211ENST00000564091 CIAPIN1Q6FI81 312 aa21.96■■□□□ 1.11
CLN3-211ENST00000564091 ISCA1Q9BUE6 129 aa21.96■■□□□ 1.11
CLN3-211ENST00000564091 PRDM10Q9NQV6 1147 aa21.96■■□□□ 1.11
CLN3-211ENST00000564091 DBF4Q9UBU7 674 aaPredicted RBP21.96■■□□□ 1.11
CLN3-211ENST00000564091 HOXB7P09629 217 aa21.95■■□□□ 1.1
CLN3-211ENST00000564091 LBX1P52954 281 aa21.95■■□□□ 1.1
CLN3-211ENST00000564091 RTL5Q5HYW3 569 aaPredicted RBP21.95■■□□□ 1.1
CLN3-211ENST00000564091 CFAP44Q96MT7 982 aa21.95■■□□□ 1.1
CLN3-211ENST00000564091 GRM1Q13255 1194 aa21.94■■□□□ 1.1
CLN3-211ENST00000564091 PAXIP1Q6ZW49 1069 aaPredicted RBP21.94■■□□□ 1.1
CLN3-211ENST00000564091 CELF1Q92879 486 aaKnown RBP21.94■■□□□ 1.1
CLN3-211ENST00000564091 BCL2L13Q9BXK5 485 aa21.94■■□□□ 1.1
CLN3-211ENST00000564091 MBIPQ9NS73 344 aa21.94■■□□□ 1.1
CLN3-211ENST00000564091 YDJCA8MPS7 323 aa21.93■■□□□ 1.1
CLN3-211ENST00000564091 HYPKQ9NX55 129 aa21.93■■□□□ 1.1
CLN3-211ENST00000564091 TNIP1Q15025 636 aa21.92■■□□□ 1.1
CLN3-211ENST00000564091 SF3B3Q15393 1217 aaKnown RBP21.92■■□□□ 1.1
CLN3-211ENST00000564091 CYP4F22Q6NT55 531 aa21.92■■□□□ 1.1
CLN3-211ENST00000564091 TMC4Q7Z404 712 aa21.92■■□□□ 1.1
CLN3-211ENST00000564091 CAPNS2Q96L46 248 aa21.92■■□□□ 1.1
CLN3-211ENST00000564091 GLIS2Q9BZE0 524 aaPredicted RBP21.92■■□□□ 1.1
CLN3-211ENST00000564091 SHTN1A0MZ66 631 aa21.91■■□□□ 1.1
CLN3-211ENST00000564091 HIRAP54198 1017 aaPredicted RBP21.91■■□□□ 1.1
CLN3-211ENST00000564091 MAP2K1Q02750 393 aaPredicted RBP21.91■■□□□ 1.1
CLN3-211ENST00000564091 NSFL1CQ9UNZ2 370 aaKnown RBP21.91■■□□□ 1.1
CLN3-211ENST00000564091 ELL2O00472 640 aaPredicted RBP21.9■■□□□ 1.1
CLN3-211ENST00000564091 IRS4O14654 1257 aaPredicted RBP21.9■■□□□ 1.1
CLN3-211ENST00000564091 HSPA8P11142 646 aaKnown RBP21.9■■□□□ 1.1
CLN3-211ENST00000564091 TRPM4Q8TD43 1214 aa21.9■■□□□ 1.1
CLN3-211ENST00000564091 PRKRIP1Q9H875 184 aaPredicted RBP21.9■■□□□ 1.1
CLN3-211ENST00000564091 CNOT7Q9UIV1 285 aaKnown RBP21.9■■□□□ 1.1
CLN3-211ENST00000564091 TLL2Q9Y6L7 1015 aa21.9■■□□□ 1.1
CLN3-211ENST00000564091 APAF1O14727 1248 aa21.89■■□□□ 1.09
CLN3-211ENST00000564091 RIMBP2O15034 1052 aa21.89■■□□□ 1.09
CLN3-211ENST00000564091 CELF2O95319 508 aaKnown RBP21.89■■□□□ 1.09
CLN3-211ENST00000564091 ZNF853P0CG23 659 aa21.89■■□□□ 1.09
CLN3-211ENST00000564091 WASHC4Q2M389 1173 aa21.89■■□□□ 1.09
CLN3-211ENST00000564091 GPR101Q96P66 508 aaPredicted RBP21.89■■□□□ 1.09
CLN3-211ENST00000564091 PGAP2Q9UHJ9 254 aa21.89■■□□□ 1.09
CLN3-211ENST00000564091 ZBTB12Q9Y330 459 aaPredicted RBP21.89■■□□□ 1.09
CLN3-211ENST00000564091 ECE1P42892 770 aa21.88■■□□□ 1.09
CLN3-211ENST00000564091 GPSM2P81274 684 aa21.88■■□□□ 1.09
CLN3-211ENST00000564091 TRIM28Q13263 835 aaKnown RBP21.88■■□□□ 1.09
CLN3-211ENST00000564091 RIC3Q7Z5B4 369 aa21.88■■□□□ 1.09
CLN3-211ENST00000564091 PHAXQ9H814 394 aaKnown RBP21.88■■□□□ 1.09
CLN3-211ENST00000564091 DBNDD1Q9H9R9 158 aa21.88■■□□□ 1.09
CLN3-211ENST00000564091 POLLQ9UGP5 575 aa21.88■■□□□ 1.09
CLN3-211ENST00000564091 CDHR2Q9BYE9 1310 aa21.87■■□□□ 1.09
CLN3-211ENST00000564091 C6orf229H3BNL8 230 aa21.87■■□□□ 1.09
CLN3-211ENST00000564091 H7C1D1 291 aa21.86■■□□□ 1.09
CLN3-211ENST00000564091 PSMD14O00487 310 aa21.86■■□□□ 1.09
CLN3-211ENST00000564091 GOLGA2Q08379 1002 aa21.86■■□□□ 1.09
CLN3-211ENST00000564091 MICALL2Q8IY33 904 aa21.86■■□□□ 1.09
CLN3-211ENST00000564091 ZC3H15Q8WU90 426 aaKnown RBP21.86■■□□□ 1.09
CLN3-211ENST00000564091 ZNF408Q9H9D4 720 aa21.86■■□□□ 1.09
CLN3-211ENST00000564091 IFT57Q9NWB7 429 aa21.86■■□□□ 1.09
CLN3-211ENST00000564091 AOC2O75106 756 aa21.85■■□□□ 1.09
CLN3-211ENST00000564091 RPS8P62241 208 aaKnown RBP21.85■■□□□ 1.09
CLN3-211ENST00000564091 DOK7Q18PE1 504 aa21.85■■□□□ 1.09
CLN3-211ENST00000564091 SAPCD2Q86UD0 394 aa21.85■■□□□ 1.09
CLN3-211ENST00000564091 SEC31BQ9NQW1 1179 aa21.85■■□□□ 1.09
CLN3-211ENST00000564091 KCNQ5Q9NR82 932 aa21.85■■□□□ 1.09
CLN3-211ENST00000564091 GNAI1P63096 354 aa21.84■■□□□ 1.09
CLN3-211ENST00000564091 DLK2Q6UY11 383 aa21.84■■□□□ 1.09
CLN3-211ENST00000564091 CDC37L1Q7L3B6 337 aa21.84■■□□□ 1.09
CLN3-211ENST00000564091 SAMD7Q7Z3H4 446 aa21.84■■□□□ 1.09
CLN3-211ENST00000564091 ZBTB38Q8NAP3 1195 aaPredicted RBP21.84■■□□□ 1.09
CLN3-211ENST00000564091 C8orf58Q8NAV2 365 aa21.84■■□□□ 1.09
CLN3-211ENST00000564091 JARID2Q92833 1246 aaPredicted RBP21.84■■□□□ 1.09
CLN3-211ENST00000564091 MYD88Q99836 296 aa21.84■■□□□ 1.09
CLN3-211ENST00000564091 DUOX1Q9NRD9 1551 aa21.83■■□□□ 1.09
CLN3-211ENST00000564091 USP48Q86UV5 1035 aa21.83■■□□□ 1.09
CLN3-211ENST00000564091 TBC1D16Q8TBP0 767 aa21.83■■□□□ 1.09
CLN3-211ENST00000564091 DPF2Q92785 391 aa21.83■■□□□ 1.09
CLN3-211ENST00000564091 BEGAINQ9BUH8 593 aa21.83■■□□□ 1.09
CLN3-211ENST00000564091 ECE2O60344 883 aa21.82■■□□□ 1.08
CLN3-211ENST00000564091 TBC1D10BQ4KMP7 808 aaPredicted RBP21.82■■□□□ 1.08
CLN3-211ENST00000564091 EGFRP00533 1210 aa21.81■■□□□ 1.08
CLN3-211ENST00000564091 CALD1Q05682 793 aaKnown RBP21.81■■□□□ 1.08
CLN3-211ENST00000564091 RBM26Q5T8P6 1007 aaKnown RBP21.81■■□□□ 1.08
CLN3-211ENST00000564091 CCDC85AQ96PX6 553 aaPredicted RBP21.81■■□□□ 1.08
CLN3-211ENST00000564091 EYA3Q99504 573 aa21.81■■□□□ 1.08
CLN3-211ENST00000564091 TSKSQ9UJT2 592 aa21.81■■□□□ 1.08
CLN3-211ENST00000564091 COL4A1P02462 1669 aa21.8■■□□□ 1.08
CLN3-211ENST00000564091 MAP2K2P36507 400 aa21.8■■□□□ 1.08
CLN3-211ENST00000564091 RTL9Q8NET4 1388 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms