RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 SP8Q8IXZ3 490 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 MPNDQ8N594 471 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 SUPT20HQ8NEM7 779 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 KLRG1Q96E93 195 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 STK31Q9BXU1 1019 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 CHMP4AQ9BY43 222 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 CLEC11AQ9Y240 323 aa22.77■■□□□ 1.24
NME3-205ENST00000563854 EPHX2P34913 555 aa22.76■■□□□ 1.23
NME3-205ENST00000563854 LDHDQ86WU2 507 aa22.76■■□□□ 1.23
NME3-205ENST00000563854 TRIM28Q13263 835 aaKnown RBP22.75■■□□□ 1.23
NME3-205ENST00000563854 TWISTNBQ3B726 338 aaPredicted RBP22.75■■□□□ 1.23
NME3-205ENST00000563854 LMOD1P29536 600 aaPredicted RBP22.74■■□□□ 1.23
NME3-205ENST00000563854 FAM9BQ8IZU0 186 aa22.74■■□□□ 1.23
NME3-205ENST00000563854 ZBTB38Q8NAP3 1195 aaPredicted RBP22.74■■□□□ 1.23
NME3-205ENST00000563854 JARID2Q92833 1246 aaPredicted RBP22.74■■□□□ 1.23
NME3-205ENST00000563854 CELF1Q92879 486 aaKnown RBP22.74■■□□□ 1.23
NME3-205ENST00000563854 MAP3K2Q9Y2U5 619 aa22.74■■□□□ 1.23
NME3-205ENST00000563854 SF3B3Q15393 1217 aaKnown RBP22.73■■□□□ 1.23
NME3-205ENST00000563854 METTL22Q9BUU2 404 aaPredicted RBP22.73■■□□□ 1.23
NME3-205ENST00000563854 CWC25Q9NXE8 425 aaPredicted RBP22.73■■□□□ 1.23
NME3-205ENST00000563854 IL16Q14005 1332 aa22.73■■□□□ 1.23
NME3-205ENST00000563854 TMC4Q7Z404 712 aa22.72■■□□□ 1.23
NME3-205ENST00000563854 CCDC191Q8NCU4 936 aa22.72■■□□□ 1.23
NME3-205ENST00000563854 RTFDC1Q9BY42 306 aaPredicted RBP22.72■■□□□ 1.23
NME3-205ENST00000563854 FANCIQ9NVI1 1328 aa22.72■■□□□ 1.23
NME3-205ENST00000563854 COL4A1P02462 1669 aa22.71■■□□□ 1.23
NME3-205ENST00000563854 LRRC37AA6NMS7 1700 aa22.71■■□□□ 1.23
NME3-205ENST00000563854 CCDC85AQ96PX6 553 aaPredicted RBP22.71■■□□□ 1.23
NME3-205ENST00000563854 PI4KAP2A4QPH2 592 aa22.7■■□□□ 1.22
NME3-205ENST00000563854 PNMA8AQ86V59 439 aaPredicted RBP22.7■■□□□ 1.22
NME3-205ENST00000563854 PI4KAP1Q8N8J0 262 aa22.7■■□□□ 1.22
NME3-205ENST00000563854 VPS33BQ9H267 617 aa22.7■■□□□ 1.22
NME3-205ENST00000563854 ZNRF3Q9ULT6 936 aa22.7■■□□□ 1.22
NME3-205ENST00000563854 DUOX1Q9NRD9 1551 aa22.7■■□□□ 1.22
NME3-205ENST00000563854 LTBP1Q14766 1721 aa22.7■■□□□ 1.22
NME3-205ENST00000563854 PCCAP05165 728 aaPredicted RBP22.69■■□□□ 1.22
NME3-205ENST00000563854 HSP90B1P14625 803 aaKnown RBP22.69■■□□□ 1.22
NME3-205ENST00000563854 SCNN1DP51172 638 aa22.69■■□□□ 1.22
NME3-205ENST00000563854 KIAA2012Q0VF49 1180 aa22.69■■□□□ 1.22
NME3-205ENST00000563854 KSR2Q6VAB6 950 aa22.69■■□□□ 1.22
NME3-205ENST00000563854 G2E3Q7L622 706 aa22.69■■□□□ 1.22
NME3-205ENST00000563854 NSFL1CQ9UNZ2 370 aaKnown RBP22.69■■□□□ 1.22
NME3-205ENST00000563854 SLC4A2P04920 1241 aa22.68■■□□□ 1.22
NME3-205ENST00000563854 EPS15P42566 896 aa22.68■■□□□ 1.22
NME3-205ENST00000563854 NEXNQ0ZGT2 675 aa22.68■■□□□ 1.22
NME3-205ENST00000563854 MAP1SQ66K74 1059 aaPredicted RBP22.68■■□□□ 1.22
NME3-205ENST00000563854 SEC31BQ9NQW1 1179 aa22.68■■□□□ 1.22
NME3-205ENST00000563854 ADAMTSL1Q8N6G6 1762 aa22.68■■□□□ 1.22
NME3-205ENST00000563854 C6orf229H3BNL8 230 aa22.67■■□□□ 1.22
NME3-205ENST00000563854 RAD17O75943 681 aa22.67■■□□□ 1.22
NME3-205ENST00000563854 CXCL9Q07325 125 aa22.67■■□□□ 1.22
NME3-205ENST00000563854 NCBP3Q53F19 620 aaKnown RBP22.67■■□□□ 1.22
NME3-205ENST00000563854 RIMBP2O15034 1052 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 PDE8AO60658 829 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 RPS8P62241 208 aaKnown RBP22.66■■□□□ 1.22
NME3-205ENST00000563854 GPSM2P81274 684 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 CWF19L2Q2TBE0 894 aaKnown RBP22.66■■□□□ 1.22
NME3-205ENST00000563854 CCDC152Q4G0S7 254 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 CIAPIN1Q6FI81 312 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 WDR63Q8IWG1 891 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 JMYQ8N9B5 988 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 CREBZFQ9NS37 354 aa22.66■■□□□ 1.22
NME3-205ENST00000563854 MKRN1Q9UHC7 482 aaKnown RBP22.66■■□□□ 1.22
NME3-205ENST00000563854 PASKQ96RG2 1323 aa22.65■■□□□ 1.22
NME3-205ENST00000563854 IGKV5-2P06315 115 aa22.65■■□□□ 1.22
NME3-205ENST00000563854 EXOSC9Q06265 439 aaKnown RBP22.65■■□□□ 1.22
NME3-205ENST00000563854 WASHC4Q2M389 1173 aa22.65■■□□□ 1.22
NME3-205ENST00000563854 GMPSP49915 693 aaPredicted RBP22.64■■□□□ 1.21
NME3-205ENST00000563854 FLIIQ13045 1269 aa22.64■■□□□ 1.21
NME3-205ENST00000563854 FKBP5Q13451 457 aaPredicted RBP22.64■■□□□ 1.21
NME3-205ENST00000563854 CNTROBQ8N137 903 aa22.64■■□□□ 1.21
NME3-205ENST00000563854 GPR101Q96P66 508 aaPredicted RBP22.64■■□□□ 1.21
NME3-205ENST00000563854 BCL2L13Q9BXK5 485 aa22.64■■□□□ 1.21
NME3-205ENST00000563854 ITGBL1O95965 494 aaPredicted RBP22.63■■□□□ 1.21
NME3-205ENST00000563854 DBNDD1Q9H9R9 158 aa22.63■■□□□ 1.21
NME3-205ENST00000563854 GPRC5DQ9NZD1 345 aa22.63■■□□□ 1.21
NME3-205ENST00000563854 CDHR2Q9BYE9 1310 aa22.62■■□□□ 1.21
NME3-205ENST00000563854 YDJCA8MPS7 323 aa22.62■■□□□ 1.21
NME3-205ENST00000563854 TNIP1Q15025 636 aa22.62■■□□□ 1.21
NME3-205ENST00000563854 ANKIB1Q9P2G1 1089 aa22.62■■□□□ 1.21
NME3-205ENST00000563854 POLLQ9UGP5 575 aa22.62■■□□□ 1.21
NME3-205ENST00000563854 NEURL1BA8MQ27 555 aa22.61■■□□□ 1.21
NME3-205ENST00000563854 CTSWP56202 376 aa22.61■■□□□ 1.21
NME3-205ENST00000563854 USP50Q70EL3 339 aaPredicted RBP22.61■■□□□ 1.21
NME3-205ENST00000563854 EYA3Q99504 573 aa22.61■■□□□ 1.21
NME3-205ENST00000563854 SPINK5Q9NQ38 1064 aaPredicted RBP22.61■■□□□ 1.21
NME3-205ENST00000563854 ADARB2Q9NS39 739 aaKnown RBP22.61■■□□□ 1.21
NME3-205ENST00000563854 TMEM88BA6NKF7 163 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 VAMP4O75379 141 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 UFL1O94874 794 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 DOK7Q18PE1 504 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 UBE3BQ7Z3V4 1068 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 ANKRD18AQ8IVF6 992 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 TBC1D16Q8TBP0 767 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 MYH16Q9H6N6 1097 aa22.6■■□□□ 1.21
NME3-205ENST00000563854 G3V3G9 751 aa22.58■■□□□ 1.21
NME3-205ENST00000563854 ECE2O60344 883 aa22.58■■□□□ 1.21
NME3-205ENST00000563854 DCAF8Q5TAQ9 597 aa22.58■■□□□ 1.21
NME3-205ENST00000563854 DNAAF4Q8WXU2 420 aa22.58■■□□□ 1.21
NME3-205ENST00000563854 GGA1Q9UJY5 639 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms