RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ELL2O00472 640 aaPredicted RBP22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 SCNN1DP51172 638 aa22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 GOLGA2Q08379 1002 aa22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 KIAA2012Q0VF49 1180 aa22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 EAPPQ56P03 285 aaPredicted RBP22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 ZNRF3Q9ULT6 936 aa22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 GJA3Q9Y6H8 435 aa22.27■■□□□ 1.16
VPS9D1-203ENST00000563798 LRRC37AA6NMS7 1700 aa22.26■■□□□ 1.15
VPS9D1-203ENST00000563798 LTBP1Q14766 1721 aa22.26■■□□□ 1.15
VPS9D1-203ENST00000563798 RIC3Q7Z5B4 369 aa22.26■■□□□ 1.15
VPS9D1-203ENST00000563798 LMOD1P29536 600 aaPredicted RBP22.25■■□□□ 1.15
VPS9D1-203ENST00000563798 CCDC30Q5VVM6 783 aa22.25■■□□□ 1.15
VPS9D1-203ENST00000563798 ZBTB38Q8NAP3 1195 aaPredicted RBP22.25■■□□□ 1.15
VPS9D1-203ENST00000563798 IRS4O14654 1257 aaPredicted RBP22.24■■□□□ 1.15
VPS9D1-203ENST00000563798 WWC1Q8IX03 1113 aa22.24■■□□□ 1.15
VPS9D1-203ENST00000563798 CNTROBQ8N137 903 aa22.24■■□□□ 1.15
VPS9D1-203ENST00000563798 CLEC11AQ9Y240 323 aa22.24■■□□□ 1.15
VPS9D1-203ENST00000563798 HSP90B1P14625 803 aaKnown RBP22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 EPS15P42566 896 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 CXCL9Q07325 125 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 USP50Q70EL3 339 aaPredicted RBP22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 TSPYL6Q8N831 410 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 CCDC191Q8NCU4 936 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 CELF1Q92879 486 aaKnown RBP22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 DUOX1Q9NRD9 1551 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 IL16Q14005 1332 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 PCNTO95613 3336 aa22.23■■□□□ 1.15
VPS9D1-203ENST00000563798 TMEM88BA6NKF7 163 aa22.22■■□□□ 1.15
VPS9D1-203ENST00000563798 ZNF428Q96B54 188 aa22.22■■□□□ 1.15
VPS9D1-203ENST00000563798 METTL22Q9BUU2 404 aaPredicted RBP22.22■■□□□ 1.15
VPS9D1-203ENST00000563798 CNTNAP1P78357 1384 aa22.22■■□□□ 1.15
VPS9D1-203ENST00000563798 TAF1P21675 1872 aa22.22■■□□□ 1.15
VPS9D1-203ENST00000563798 DDX58O95786 925 aaKnown RBP22.21■■□□□ 1.15
VPS9D1-203ENST00000563798 PCCAP05165 728 aaPredicted RBP22.21■■□□□ 1.15
VPS9D1-203ENST00000563798 MAP1SQ66K74 1059 aaPredicted RBP22.21■■□□□ 1.15
VPS9D1-203ENST00000563798 GPRC5DQ9NZD1 345 aa22.21■■□□□ 1.15
VPS9D1-203ENST00000563798 CDHR2Q9BYE9 1310 aa22.21■■□□□ 1.15
VPS9D1-203ENST00000563798 MYD88Q99836 296 aa22.2■■□□□ 1.14
VPS9D1-203ENST00000563798 ZNF316A6NFI3 1004 aaPredicted RBP22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 RPS8P62241 208 aaKnown RBP22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 CIAPIN1Q6FI81 312 aa22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 TSR2Q969E8 191 aaKnown RBP22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 ADARB2Q9NS39 739 aaKnown RBP22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 CWC25Q9NXE8 425 aaPredicted RBP22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 MKRN1Q9UHC7 482 aaKnown RBP22.19■■□□□ 1.14
VPS9D1-203ENST00000563798 COL4A1P02462 1669 aa22.18■■□□□ 1.14
VPS9D1-203ENST00000563798 TNIP1Q15025 636 aa22.18■■□□□ 1.14
VPS9D1-203ENST00000563798 RTL5Q5HYW3 569 aaPredicted RBP22.18■■□□□ 1.14
VPS9D1-203ENST00000563798 KSR2Q6VAB6 950 aa22.18■■□□□ 1.14
VPS9D1-203ENST00000563798 HSPA1AP0DMV8 641 aaKnown RBP22.17■■□□□ 1.14
VPS9D1-203ENST00000563798 HSPA1BP0DMV9 641 aaKnown RBP22.17■■□□□ 1.14
VPS9D1-203ENST00000563798 GMPSP49915 693 aaPredicted RBP22.17■■□□□ 1.14
VPS9D1-203ENST00000563798 MRS2Q9HD23 443 aa22.17■■□□□ 1.14
VPS9D1-203ENST00000563798 NSFL1CQ9UNZ2 370 aaKnown RBP22.17■■□□□ 1.14
VPS9D1-203ENST00000563798 RASSF10A6NK89 507 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 YDJCA8MPS7 323 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 ANP32CO43423 234 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 PDE8AO60658 829 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 WASHC4Q2M389 1173 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 PODXL2Q9NZ53 605 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 POLLQ9UGP5 575 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 PGAP2Q9UHJ9 254 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 MAP3K2Q9Y2U5 619 aa22.16■■□□□ 1.14
VPS9D1-203ENST00000563798 GPSM2P81274 684 aa22.15■■□□□ 1.14
VPS9D1-203ENST00000563798 TWISTNBQ3B726 338 aaPredicted RBP22.15■■□□□ 1.14
VPS9D1-203ENST00000563798 COL13A1Q5TAT6 717 aaPredicted RBP22.15■■□□□ 1.14
VPS9D1-203ENST00000563798 STK31Q9BXU1 1019 aa22.15■■□□□ 1.14
VPS9D1-203ENST00000563798 PI4KAP2A4QPH2 592 aa22.14■■□□□ 1.13
VPS9D1-203ENST00000563798 RAD17O75943 681 aa22.14■■□□□ 1.13
VPS9D1-203ENST00000563798 IGKV5-2P06315 115 aa22.14■■□□□ 1.13
VPS9D1-203ENST00000563798 CCDC152Q4G0S7 254 aa22.14■■□□□ 1.13
VPS9D1-203ENST00000563798 PI4KAP1Q8N8J0 262 aa22.14■■□□□ 1.13
VPS9D1-203ENST00000563798 SEC31BQ9NQW1 1179 aa22.14■■□□□ 1.13
VPS9D1-203ENST00000563798 VEGFBP49765 207 aa22.13■■□□□ 1.13
VPS9D1-203ENST00000563798 WDR63Q8IWG1 891 aa22.13■■□□□ 1.13
VPS9D1-203ENST00000563798 TBC1D16Q8TBP0 767 aa22.13■■□□□ 1.13
VPS9D1-203ENST00000563798 ZC3H15Q8WU90 426 aaKnown RBP22.13■■□□□ 1.13
VPS9D1-203ENST00000563798 DPF2Q92785 391 aa22.13■■□□□ 1.13
VPS9D1-203ENST00000563798 EYA3Q99504 573 aa22.13■■□□□ 1.13
VPS9D1-203ENST00000563798 C6orf229H3BNL8 230 aa22.11■■□□□ 1.13
VPS9D1-203ENST00000563798 BCL2L13Q9BXK5 485 aa22.11■■□□□ 1.13
VPS9D1-203ENST00000563798 FANCIQ9NVI1 1328 aa22.1■■□□□ 1.13
VPS9D1-203ENST00000563798 SLC4A2P04920 1241 aa22.1■■□□□ 1.13
VPS9D1-203ENST00000563798 NEXNQ0ZGT2 675 aa22.1■■□□□ 1.13
VPS9D1-203ENST00000563798 DEFB115Q30KQ5 88 aa22.1■■□□□ 1.13
VPS9D1-203ENST00000563798 CNOT7Q9UIV1 285 aaKnown RBP22.1■■□□□ 1.13
VPS9D1-203ENST00000563798 HIRAP54198 1017 aaPredicted RBP22.09■■□□□ 1.13
VPS9D1-203ENST00000563798 G2E3Q7L622 706 aa22.09■■□□□ 1.13
VPS9D1-203ENST00000563798 JARID2Q92833 1246 aaPredicted RBP22.09■■□□□ 1.13
VPS9D1-203ENST00000563798 DBNDD1Q9H9R9 158 aa22.09■■□□□ 1.13
VPS9D1-203ENST00000563798 NEURL1BA8MQ27 555 aa22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 H7C1W4 665 aa22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 PSMD14O00487 310 aa22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 RIMBP2O15034 1052 aa22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 RPS12P25398 132 aaKnown RBP22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 CTSWP56202 376 aa22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 CST9Q5W186 159 aa22.08■■□□□ 1.13
VPS9D1-203ENST00000563798 RTL9Q8NET4 1388 aa22.08■■□□□ 1.12
VPS9D1-203ENST00000563798 H7C1D1 291 aa22.07■■□□□ 1.12
VPS9D1-203ENST00000563798 ECE2O60344 883 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms