RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ZNF219Q9P2Y4 722 aaPredicted RBP11.06□□□□□ -0.64
VPS39-207ENST00000563692 AFDNP55196 1824 aaKnown RBP11.06□□□□□ -0.64
VPS39-207ENST00000563692 ZC3H4Q9UPT8 1303 aaKnown RBP11.06□□□□□ -0.64
VPS39-207ENST00000563692 IBTKQ9P2D0 1353 aaPredicted RBP11.05□□□□□ -0.64
VPS39-207ENST00000563692 C21orf2O43822 256 aa11.05□□□□□ -0.64
VPS39-207ENST00000563692 RASSF7Q02833 373 aa11.05□□□□□ -0.64
VPS39-207ENST00000563692 PRPF40BQ6NWY9 871 aaKnown RBP11.05□□□□□ -0.64
VPS39-207ENST00000563692 PLBD2Q8NHP8 589 aa11.05□□□□□ -0.64
VPS39-207ENST00000563692 LRRFIP2Q9Y608 721 aaKnown RBP11.05□□□□□ -0.64
VPS39-207ENST00000563692 ARFGEF1Q9Y6D6 1849 aa11.05□□□□□ -0.64
VPS39-207ENST00000563692 BRCA1P38398 1863 aaKnown RBP11.04□□□□□ -0.64
VPS39-207ENST00000563692 LAMB4A4D0S4 1761 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 BCORQ6W2J9 1755 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 EIF5BO60841 1220 aaKnown RBP11.04□□□□□ -0.64
VPS39-207ENST00000563692 GPTP24298 496 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 ANP32AP39687 249 aaKnown RBP11.04□□□□□ -0.64
VPS39-207ENST00000563692 PARP10Q53GL7 1025 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 HSP90AB4PQ58FF6 505 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 HSP90AB3PQ58FF7 597 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 PPP1R42Q7Z4L9 355 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 TAOK3Q9H2K8 898 aa11.04□□□□□ -0.64
VPS39-207ENST00000563692 GRM8O00222 908 aa11.03□□□□□ -0.64
VPS39-207ENST00000563692 KIF3CO14782 793 aa11.03□□□□□ -0.64
VPS39-207ENST00000563692 RAB11FIP3O75154 756 aa11.03□□□□□ -0.64
VPS39-207ENST00000563692 NBPF7P0C2Y1 421 aaPredicted RBP11.03□□□□□ -0.64
VPS39-207ENST00000563692 ALDH1B1P30837 517 aa11.03□□□□□ -0.64
VPS39-207ENST00000563692 GIGYF2Q6Y7W6 1299 aaKnown RBP11.03□□□□□ -0.64
VPS39-207ENST00000563692 LRP10Q7Z4F1 713 aa11.03□□□□□ -0.64
VPS39-207ENST00000563692 RPGRQ92834 1020 aaKnown RBP11.03□□□□□ -0.64
VPS39-207ENST00000563692 MYD88Q99836 296 aa11.03□□□□□ -0.64
VPS39-207ENST00000563692 UPF2Q9HAU5 1272 aaKnown RBP11.03□□□□□ -0.64
VPS39-207ENST00000563692 NFKBIEO00221 500 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 TOMM70O94826 608 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 C8orf34Q49A92 452 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 ERFEQ4G0M1 354 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 CCDC93Q567U6 631 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 DPY19L2Q6NUT2 758 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 NUTM1Q86Y26 1132 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 SSH3Q8TE77 659 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 UTP14AQ9BVJ6 771 aaKnown RBP11.02□□□□□ -0.65
VPS39-207ENST00000563692 TMX4Q9H1E5 349 aaPredicted RBP11.02□□□□□ -0.65
VPS39-207ENST00000563692 NMRK2Q9NPI5 230 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 UTYO14607 1347 aa11.02□□□□□ -0.65
VPS39-207ENST00000563692 KLRG2A4D1S0 409 aaPredicted RBP11.01□□□□□ -0.65
VPS39-207ENST00000563692 NEURL1BA8MQ27 555 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 SRGAP3O43295 1099 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 GCKRQ14397 625 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 CWF19L2Q2TBE0 894 aaKnown RBP11.01□□□□□ -0.65
VPS39-207ENST00000563692 SUSD4Q5VX71 490 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 ZNF34Q8IZ26 560 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 RTKN2Q8IZC4 609 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 LRRCC1Q9C099 1032 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 LTBP3Q9NS15 1303 aa11.01□□□□□ -0.65
VPS39-207ENST00000563692 PNMA6EA0A0J9YXQ4 647 aa11□□□□□ -0.65
VPS39-207ENST00000563692 SURF6O75683 361 aaKnown RBP11□□□□□ -0.65
VPS39-207ENST00000563692 IGKV5-2P06315 115 aa11□□□□□ -0.65
VPS39-207ENST00000563692 HSPA6P17066 643 aa11□□□□□ -0.65
VPS39-207ENST00000563692 MTX1Q13505 466 aa11□□□□□ -0.65
VPS39-207ENST00000563692 POLA2Q14181 598 aa11□□□□□ -0.65
VPS39-207ENST00000563692 BMP2KLQ5H9B9 411 aa11□□□□□ -0.65
VPS39-207ENST00000563692 RBM17Q96I25 401 aaKnown RBP11□□□□□ -0.65
VPS39-207ENST00000563692 NLRP3Q96P20 1036 aa11□□□□□ -0.65
VPS39-207ENST00000563692 UBN2Q6ZU65 1347 aa11□□□□□ -0.65
VPS39-207ENST00000563692 DLEC1Q9Y238 1755 aa11□□□□□ -0.65
VPS39-207ENST00000563692 GLTPD2A6NH11 291 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 APBB1O00213 710 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 CRY2Q49AN0 593 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 CC2D2BQ6DHV5 1058 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 ERC1Q8IUD2 1116 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 CCDC191Q8NCU4 936 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
VPS39-207ENST00000563692 RRAGCQ9HB90 399 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 EXOC6BQ9Y2D4 811 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 ANKRD31Q8N7Z5 1873 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 ABCC12Q96J65 1359 aa10.99□□□□□ -0.65
VPS39-207ENST00000563692 NTSR2O95665 410 aa10.98□□□□□ -0.65
VPS39-207ENST00000563692 VEGFAP15692 232 aaPredicted RBP10.98□□□□□ -0.65
VPS39-207ENST00000563692 FKBP4Q02790 459 aaKnown RBP eCLIP10.98□□□□□ -0.65
VPS39-207ENST00000563692 OS9Q13438 667 aaPredicted RBP10.98□□□□□ -0.65
VPS39-207ENST00000563692 TCIRG1Q13488 830 aa10.98□□□□□ -0.65
VPS39-207ENST00000563692 GRIPAP1Q4V328 841 aa10.98□□□□□ -0.65
VPS39-207ENST00000563692 PLEKHM2Q8IWE5 1019 aa10.98□□□□□ -0.65
VPS39-207ENST00000563692 CWC25Q9NXE8 425 aaPredicted RBP10.98□□□□□ -0.65
VPS39-207ENST00000563692 COL11A2P13942 1736 aaPredicted RBP10.98□□□□□ -0.65
VPS39-207ENST00000563692 ATP5J2-PTCD1G3V325 749 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 SMARCA5O60264 1052 aaPredicted RBP10.97□□□□□ -0.65
VPS39-207ENST00000563692 PRELPP51888 382 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 FSTL1Q12841 308 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 TRIM28Q13263 835 aaKnown RBP10.97□□□□□ -0.65
VPS39-207ENST00000563692 G3BP1Q13283 466 aaKnown RBP eCLIP10.97□□□□□ -0.65
VPS39-207ENST00000563692 NLRP10Q86W26 655 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 C7orf43Q8WVR3 580 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 KIF1BPQ96EK5 621 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 DDRGK1Q96HY6 314 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 SUCLG2Q96I99 432 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 CRAMP1Q96RY5 1269 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 BCL11AQ9H165 835 aa10.97□□□□□ -0.65
VPS39-207ENST00000563692 TRMT112Q9UI30 125 aaKnown RBP10.97□□□□□ -0.65
VPS39-207ENST00000563692 NOP58Q9Y2X3 529 aaKnown RBP10.97□□□□□ -0.65
VPS39-207ENST00000563692 SH3TC1Q8TE82 1336 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms