RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 ABT1Q9ULW3 272 aaKnown RBP18.16■□□□□ 0.5
LDLR-213ENST00000560502 WDR33Q9C0J8 1336 aaKnown RBP18.16■□□□□ 0.5
LDLR-213ENST00000560502 CHL1O00533 1208 aa18.15■□□□□ 0.5
LDLR-213ENST00000560502 HCLS1P14317 486 aaPredicted RBP18.15■□□□□ 0.5
LDLR-213ENST00000560502 CXCL9Q07325 125 aa18.15■□□□□ 0.5
LDLR-213ENST00000560502 TCIRG1Q13488 830 aa18.15■□□□□ 0.5
LDLR-213ENST00000560502 KRT24Q2M2I5 525 aa18.15■□□□□ 0.5
LDLR-213ENST00000560502 NECTIN2Q92692 538 aa18.15■□□□□ 0.5
LDLR-213ENST00000560502 TMX4Q9H1E5 349 aaPredicted RBP18.15■□□□□ 0.5
LDLR-213ENST00000560502 ADARB2Q9NS39 739 aaKnown RBP18.15■□□□□ 0.5
LDLR-213ENST00000560502 SH3TC1Q8TE82 1336 aa18.15■□□□□ 0.5
LDLR-213ENST00000560502 HSPA8P11142 646 aaKnown RBP18.14■□□□□ 0.49
LDLR-213ENST00000560502 KIAA2012Q0VF49 1180 aa18.14■□□□□ 0.49
LDLR-213ENST00000560502 AIMP1Q12904 312 aaKnown RBP18.14■□□□□ 0.49
LDLR-213ENST00000560502 TRIM35Q9UPQ4 493 aa18.14■□□□□ 0.49
LDLR-213ENST00000560502 CDHR2Q9BYE9 1310 aa18.14■□□□□ 0.49
LDLR-213ENST00000560502 COL4A1P02462 1669 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 TRAF5O00463 557 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 LBX1P52954 281 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 GRAPQ13588 217 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 CST9Q5W186 159 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 DPP8Q6V1X1 898 aaPredicted RBP18.13■□□□□ 0.49
LDLR-213ENST00000560502 MPNDQ8N594 471 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 GRAPLQ8TC17 118 aaPredicted RBP18.13■□□□□ 0.49
LDLR-213ENST00000560502 CHPF2Q9P2E5 772 aa18.13■□□□□ 0.49
LDLR-213ENST00000560502 TRMT112Q9UI30 125 aaKnown RBP18.13■□□□□ 0.49
LDLR-213ENST00000560502 GMPSP49915 693 aaPredicted RBP18.12■□□□□ 0.49
LDLR-213ENST00000560502 MAP2K1Q02750 393 aaPredicted RBP18.12■□□□□ 0.49
LDLR-213ENST00000560502 DDX46Q7L014 1031 aaKnown RBP18.12■□□□□ 0.49
LDLR-213ENST00000560502 CCDC146Q8IYE0 955 aa18.12■□□□□ 0.49
LDLR-213ENST00000560502 HOXB7P09629 217 aa18.11■□□□□ 0.49
LDLR-213ENST00000560502 TMC4Q7Z404 712 aa18.11■□□□□ 0.49
LDLR-213ENST00000560502 CAPNS2Q96L46 248 aa18.11■□□□□ 0.49
LDLR-213ENST00000560502 PGAP2Q9UHJ9 254 aa18.11■□□□□ 0.49
LDLR-213ENST00000560502 TLL2Q9Y6L7 1015 aa18.11■□□□□ 0.49
LDLR-213ENST00000560502 NEUROD2Q15784 382 aa18.1■□□□□ 0.49
LDLR-213ENST00000560502 CIAPIN1Q6FI81 312 aa18.1■□□□□ 0.49
LDLR-213ENST00000560502 PLBD2Q8NHP8 589 aa18.1■□□□□ 0.49
LDLR-213ENST00000560502 RUNDC1Q96C34 613 aa18.1■□□□□ 0.49
LDLR-213ENST00000560502 ISCA1Q9BUE6 129 aa18.1■□□□□ 0.49
LDLR-213ENST00000560502 ADAMTS8Q9UP79 889 aa18.1■□□□□ 0.49
LDLR-213ENST00000560502 YDJCA8MPS7 323 aa18.09■□□□□ 0.49
LDLR-213ENST00000560502 ECE1P42892 770 aa18.09■□□□□ 0.49
LDLR-213ENST00000560502 CYP4F22Q6NT55 531 aa18.09■□□□□ 0.49
LDLR-213ENST00000560502 HDGFL1Q5TGJ6 251 aa18.08■□□□□ 0.48
LDLR-213ENST00000560502 RAD17O75943 681 aa18.07■□□□□ 0.48
LDLR-213ENST00000560502 HIRAP54198 1017 aaPredicted RBP18.07■□□□□ 0.48
LDLR-213ENST00000560502 TNIP1Q15025 636 aa18.07■□□□□ 0.48
LDLR-213ENST00000560502 SF3B3Q15393 1217 aaKnown RBP18.07■□□□□ 0.48
LDLR-213ENST00000560502 NCBP3Q53F19 620 aaKnown RBP18.07■□□□□ 0.48
LDLR-213ENST00000560502 ANKRD13DQ6ZTN6 518 aa18.07■□□□□ 0.48
LDLR-213ENST00000560502 ZC3H15Q8WU90 426 aaKnown RBP18.07■□□□□ 0.48
LDLR-213ENST00000560502 DBF4Q9UBU7 674 aaPredicted RBP18.07■□□□□ 0.48
LDLR-213ENST00000560502 LAS1LQ9Y4W2 734 aaKnown RBP18.07■□□□□ 0.48
LDLR-213ENST00000560502 SAPCD2Q86UD0 394 aa18.06■□□□□ 0.48
LDLR-213ENST00000560502 TRPM4Q8TD43 1214 aa18.06■□□□□ 0.48
LDLR-213ENST00000560502 CELF1Q92879 486 aaKnown RBP18.06■□□□□ 0.48
LDLR-213ENST00000560502 ZNF428Q96B54 188 aa18.06■□□□□ 0.48
LDLR-213ENST00000560502 GPR101Q96P66 508 aaPredicted RBP18.06■□□□□ 0.48
LDLR-213ENST00000560502 GLIS2Q9BZE0 524 aaPredicted RBP18.06■□□□□ 0.48
LDLR-213ENST00000560502 SCN9AQ15858 1988 aa18.05■□□□□ 0.48
LDLR-213ENST00000560502 SHTN1A0MZ66 631 aa18.05■□□□□ 0.48
LDLR-213ENST00000560502 CELF2O95319 508 aaKnown RBP18.05■□□□□ 0.48
LDLR-213ENST00000560502 PAXIP1Q6ZW49 1069 aaPredicted RBP18.05■□□□□ 0.48
LDLR-213ENST00000560502 FAM89AQ96GI7 184 aa18.05■□□□□ 0.48
LDLR-213ENST00000560502 HHIPL1Q96JK4 782 aa18.05■□□□□ 0.48
LDLR-213ENST00000560502 CFAP44Q96MT7 982 aa18.05■□□□□ 0.48
LDLR-213ENST00000560502 BCL2L13Q9BXK5 485 aa18.05■□□□□ 0.48
LDLR-213ENST00000560502 POLR2AP24928 1970 aaKnown RBP18.04■□□□□ 0.48
LDLR-213ENST00000560502 ATP5J2-PTCD1G3V325 749 aa18.04■□□□□ 0.48
LDLR-213ENST00000560502 MAP2K2P36507 400 aa18.04■□□□□ 0.48
LDLR-213ENST00000560502 TRIM28Q13263 835 aaKnown RBP18.04■□□□□ 0.48
LDLR-213ENST00000560502 HYPKQ9NX55 129 aa18.04■□□□□ 0.48
LDLR-213ENST00000560502 CNOT7Q9UIV1 285 aaKnown RBP18.04■□□□□ 0.48
LDLR-213ENST00000560502 PSME4Q14997 1843 aa18.03■□□□□ 0.48
LDLR-213ENST00000560502 ZNF853P0CG23 659 aa18.03■□□□□ 0.48
LDLR-213ENST00000560502 DUSP27Q5VZP5 1158 aa18.03■□□□□ 0.48
LDLR-213ENST00000560502 ABHD8Q96I13 439 aa18.03■□□□□ 0.48
LDLR-213ENST00000560502 MBIPQ9NS73 344 aa18.03■□□□□ 0.48
LDLR-213ENST00000560502 AOC2O75106 756 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 GPSM2P81274 684 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 GRM1Q13255 1194 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 WASHC4Q2M389 1173 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 CDC37L1Q7L3B6 337 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 MICALL2Q8IY33 904 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 DPF2Q92785 391 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 POLLQ9UGP5 575 aa18.02■□□□□ 0.48
LDLR-213ENST00000560502 PSMD14O00487 310 aa18.01■□□□□ 0.47
LDLR-213ENST00000560502 IRS4O14654 1257 aaPredicted RBP18.01■□□□□ 0.47
LDLR-213ENST00000560502 BEGAINQ9BUH8 593 aa18.01■□□□□ 0.47
LDLR-213ENST00000560502 DBNDD1Q9H9R9 158 aa18.01■□□□□ 0.47
LDLR-213ENST00000560502 NSFL1CQ9UNZ2 370 aaKnown RBP18.01■□□□□ 0.47
LDLR-213ENST00000560502 ZBTB12Q9Y330 459 aaPredicted RBP18.01■□□□□ 0.47
LDLR-213ENST00000560502 RTL9Q8NET4 1388 aa18.01■□□□□ 0.47
LDLR-213ENST00000560502 H7C1D1 291 aa18■□□□□ 0.47
LDLR-213ENST00000560502 BRPF1P55201 1214 aaPredicted RBP17.99■□□□□ 0.47
LDLR-213ENST00000560502 RTL5Q5HYW3 569 aaPredicted RBP17.99■□□□□ 0.47
LDLR-213ENST00000560502 TBC1D16Q8TBP0 767 aa17.99■□□□□ 0.47
LDLR-213ENST00000560502 CASP8AP2Q9UKL3 1982 aa17.99■□□□□ 0.47
LDLR-213ENST00000560502 ZNF609O15014 1411 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms