RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 AOC3Q16853 763 aa17.6■□□□□ 0.41
SMAD3-214ENST00000560402 DPP8Q6V1X1 898 aaPredicted RBP17.6■□□□□ 0.41
SMAD3-214ENST00000560402 USP50Q70EL3 339 aaPredicted RBP17.6■□□□□ 0.41
SMAD3-214ENST00000560402 CNTROBQ8N137 903 aa17.6■□□□□ 0.41
SMAD3-214ENST00000560402 THSD7BQ9C0I4 1608 aa17.6■□□□□ 0.41
SMAD3-214ENST00000560402 TAF1P21675 1872 aa17.6■□□□□ 0.41
SMAD3-214ENST00000560402 HCLS1P14317 486 aaPredicted RBP17.59■□□□□ 0.41
SMAD3-214ENST00000560402 TNS4Q8IZW8 715 aa17.59■□□□□ 0.41
SMAD3-214ENST00000560402 MPNDQ8N594 471 aa17.59■□□□□ 0.41
SMAD3-214ENST00000560402 KIAA2012Q0VF49 1180 aa17.58■□□□□ 0.4
SMAD3-214ENST00000560402 MAP1SQ66K74 1059 aaPredicted RBP17.58■□□□□ 0.4
SMAD3-214ENST00000560402 ANKRD13DQ6ZTN6 518 aa17.58■□□□□ 0.4
SMAD3-214ENST00000560402 SLC51AQ86UW1 340 aa17.58■□□□□ 0.4
SMAD3-214ENST00000560402 YTHDC1Q96MU7 727 aaKnown RBP17.58■□□□□ 0.4
SMAD3-214ENST00000560402 ISCA1Q9BUE6 129 aa17.58■□□□□ 0.4
SMAD3-214ENST00000560402 IFT57Q9NWB7 429 aa17.58■□□□□ 0.4
SMAD3-214ENST00000560402 ZNRF3Q9ULT6 936 aa17.58■□□□□ 0.4
SMAD3-214ENST00000560402 RASSF10A6NK89 507 aa17.57■□□□□ 0.4
SMAD3-214ENST00000560402 DUSP27Q5VZP5 1158 aa17.57■□□□□ 0.4
SMAD3-214ENST00000560402 ADARB2Q9NS39 739 aaKnown RBP17.57■□□□□ 0.4
SMAD3-214ENST00000560402 MBIPQ9NS73 344 aa17.57■□□□□ 0.4
SMAD3-214ENST00000560402 ZNF853P0CG23 659 aa17.56■□□□□ 0.4
SMAD3-214ENST00000560402 GNAI1P63096 354 aa17.56■□□□□ 0.4
SMAD3-214ENST00000560402 TRIM28Q13263 835 aaKnown RBP17.56■□□□□ 0.4
SMAD3-214ENST00000560402 CHMP4AQ9BY43 222 aa17.56■□□□□ 0.4
SMAD3-214ENST00000560402 GPRC5DQ9NZD1 345 aa17.56■□□□□ 0.4
SMAD3-214ENST00000560402 HSP90B1P14625 803 aaKnown RBP17.55■□□□□ 0.4
SMAD3-214ENST00000560402 EPS15P42566 896 aa17.55■□□□□ 0.4
SMAD3-214ENST00000560402 GOLGA2Q08379 1002 aa17.55■□□□□ 0.4
SMAD3-214ENST00000560402 SF3B3Q15393 1217 aaKnown RBP17.55■□□□□ 0.4
SMAD3-214ENST00000560402 CIAPIN1Q6FI81 312 aa17.55■□□□□ 0.4
SMAD3-214ENST00000560402 VEGFBP49765 207 aa17.54■□□□□ 0.4
SMAD3-214ENST00000560402 TNIP1Q15025 636 aa17.54■□□□□ 0.4
SMAD3-214ENST00000560402 AIDAQ96BJ3 306 aa17.54■□□□□ 0.4
SMAD3-214ENST00000560402 CXCL9Q07325 125 aa17.53■□□□□ 0.4
SMAD3-214ENST00000560402 DEFB115Q30KQ5 88 aa17.53■□□□□ 0.4
SMAD3-214ENST00000560402 ABT1Q9ULW3 272 aaKnown RBP17.53■□□□□ 0.4
SMAD3-214ENST00000560402 ATP5J2-PTCD1G3V325 749 aa17.52■□□□□ 0.4
SMAD3-214ENST00000560402 APAF1O14727 1248 aa17.52■□□□□ 0.4
SMAD3-214ENST00000560402 FAM89AQ96GI7 184 aa17.52■□□□□ 0.4
SMAD3-214ENST00000560402 PRDM10Q9NQV6 1147 aa17.52■□□□□ 0.4
SMAD3-214ENST00000560402 MYH3P11055 1940 aa17.52■□□□□ 0.4
SMAD3-214ENST00000560402 IRS4O14654 1257 aaPredicted RBP17.51■□□□□ 0.39
SMAD3-214ENST00000560402 FOXN1O15353 648 aa17.51■□□□□ 0.39
SMAD3-214ENST00000560402 CTCFP49711 727 aaPredicted RBP17.51■□□□□ 0.39
SMAD3-214ENST00000560402 GMPSP49915 693 aaPredicted RBP17.51■□□□□ 0.39
SMAD3-214ENST00000560402 RIC3Q7Z5B4 369 aa17.51■□□□□ 0.39
SMAD3-214ENST00000560402 PSME4Q14997 1843 aa17.5■□□□□ 0.39
SMAD3-214ENST00000560402 ZBTB38Q8NAP3 1195 aaPredicted RBP17.5■□□□□ 0.39
SMAD3-214ENST00000560402 ZC3H15Q8WU90 426 aaKnown RBP17.5■□□□□ 0.39
SMAD3-214ENST00000560402 CELF1Q92879 486 aaKnown RBP17.5■□□□□ 0.39
SMAD3-214ENST00000560402 BCL2L13Q9BXK5 485 aa17.5■□□□□ 0.39
SMAD3-214ENST00000560402 COL4A1P02462 1669 aa17.5■□□□□ 0.39
SMAD3-214ENST00000560402 RAD17O75943 681 aa17.49■□□□□ 0.39
SMAD3-214ENST00000560402 DDX58O95786 925 aaKnown RBP17.49■□□□□ 0.39
SMAD3-214ENST00000560402 ECE1P42892 770 aa17.49■□□□□ 0.39
SMAD3-214ENST00000560402 MAP2K1Q02750 393 aaPredicted RBP17.49■□□□□ 0.39
SMAD3-214ENST00000560402 WASHC4Q2M389 1173 aa17.49■□□□□ 0.39
SMAD3-214ENST00000560402 CCDC191Q8NCU4 936 aa17.49■□□□□ 0.39
SMAD3-214ENST00000560402 EYA3Q99504 573 aa17.49■□□□□ 0.39
SMAD3-214ENST00000560402 WBP1LQ9NX94 342 aa17.49■□□□□ 0.39
SMAD3-214ENST00000560402 WDR33Q9C0J8 1336 aaKnown RBP17.48■□□□□ 0.39
SMAD3-214ENST00000560402 CCDC30Q5VVM6 783 aa17.48■□□□□ 0.39
SMAD3-214ENST00000560402 PGAP2Q9UHJ9 254 aa17.48■□□□□ 0.39
SMAD3-214ENST00000560402 CACNA1FO60840 1977 aa17.48■□□□□ 0.39
SMAD3-214ENST00000560402 YDJCA8MPS7 323 aa17.47■□□□□ 0.39
SMAD3-214ENST00000560402 PCCAP05165 728 aaPredicted RBP17.47■□□□□ 0.39
SMAD3-214ENST00000560402 DPF2Q92785 391 aa17.47■□□□□ 0.39
SMAD3-214ENST00000560402 PHAXQ9H814 394 aaKnown RBP17.47■□□□□ 0.39
SMAD3-214ENST00000560402 NSFL1CQ9UNZ2 370 aaKnown RBP17.47■□□□□ 0.39
SMAD3-214ENST00000560402 TLL2Q9Y6L7 1015 aa17.47■□□□□ 0.39
SMAD3-214ENST00000560402 RPS12P25398 132 aaKnown RBP17.46■□□□□ 0.39
SMAD3-214ENST00000560402 RPS8P62241 208 aaKnown RBP17.46■□□□□ 0.39
SMAD3-214ENST00000560402 CCDC152Q4G0S7 254 aa17.46■□□□□ 0.39
SMAD3-214ENST00000560402 RTL5Q5HYW3 569 aaPredicted RBP17.46■□□□□ 0.39
SMAD3-214ENST00000560402 MYD88Q99836 296 aa17.46■□□□□ 0.39
SMAD3-214ENST00000560402 CWC25Q9NXE8 425 aaPredicted RBP17.46■□□□□ 0.39
SMAD3-214ENST00000560402 PODXL2Q9NZ53 605 aa17.46■□□□□ 0.39
SMAD3-214ENST00000560402 ZNF609O15014 1411 aa17.46■□□□□ 0.39
SMAD3-214ENST00000560402 C6orf229H3BNL8 230 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 H7C1D1 291 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 TRAF5O00463 557 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 PDE8AO60658 829 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 GPSM2P81274 684 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 CCDC27Q2M243 656 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 ZNF428Q96B54 188 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 HHIPL1Q96JK4 782 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 CAPNS2Q96L46 248 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 METTL22Q9BUU2 404 aaPredicted RBP17.45■□□□□ 0.38
SMAD3-214ENST00000560402 CNOT7Q9UIV1 285 aaKnown RBP17.45■□□□□ 0.38
SMAD3-214ENST00000560402 SCN9AQ15858 1988 aa17.45■□□□□ 0.38
SMAD3-214ENST00000560402 ELL2O00472 640 aaPredicted RBP17.44■□□□□ 0.38
SMAD3-214ENST00000560402 ECE2O60344 883 aa17.44■□□□□ 0.38
SMAD3-214ENST00000560402 CST9Q5W186 159 aa17.44■□□□□ 0.38
SMAD3-214ENST00000560402 PAXIP1Q6ZW49 1069 aaPredicted RBP17.44■□□□□ 0.38
SMAD3-214ENST00000560402 CDC37L1Q7L3B6 337 aa17.44■□□□□ 0.38
SMAD3-214ENST00000560402 MICALL2Q8IY33 904 aa17.44■□□□□ 0.38
SMAD3-214ENST00000560402 C8orf58Q8NAV2 365 aa17.44■□□□□ 0.38
SMAD3-214ENST00000560402 TBC1D16Q8TBP0 767 aa17.44■□□□□ 0.38
SMAD3-214ENST00000560402 TRPM4Q8TD43 1214 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms