RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 EPS15P42566 896 aa14.37□□□□□ -0.11
CCDC88C-213ENST00000557455 SCNN1DP51172 638 aa14.37□□□□□ -0.11
CCDC88C-213ENST00000557455 CALD1Q05682 793 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-213ENST00000557455 ISCA1Q9BUE6 129 aa14.37□□□□□ -0.11
CCDC88C-213ENST00000557455 ZNRF3Q9ULT6 936 aa14.37□□□□□ -0.11
CCDC88C-213ENST00000557455 LRRC37AA6NMS7 1700 aa14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 ZNF853P0CG23 659 aa14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 GNAI1P63096 354 aa14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 USP50Q70EL3 339 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 TMC4Q7Z404 712 aa14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 FAM89AQ96GI7 184 aa14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 IFT57Q9NWB7 429 aa14.36□□□□□ -0.11
CCDC88C-213ENST00000557455 TRPM7Q96QT4 1865 aa14.35□□□□□ -0.11
CCDC88C-213ENST00000557455 CXCL9Q07325 125 aa14.35□□□□□ -0.11
CCDC88C-213ENST00000557455 KIAA2012Q0VF49 1180 aa14.35□□□□□ -0.11
CCDC88C-213ENST00000557455 RIC3Q7Z5B4 369 aa14.35□□□□□ -0.11
CCDC88C-213ENST00000557455 TNS4Q8IZW8 715 aa14.35□□□□□ -0.11
CCDC88C-213ENST00000557455 ELL2O00472 640 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-213ENST00000557455 VEGFBP49765 207 aa14.34□□□□□ -0.11
CCDC88C-213ENST00000557455 GOLGA2Q08379 1002 aa14.34□□□□□ -0.11
CCDC88C-213ENST00000557455 RTL5Q5HYW3 569 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-213ENST00000557455 GPRC5DQ9NZD1 345 aa14.34□□□□□ -0.11
CCDC88C-213ENST00000557455 TRIM28Q13263 835 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 SF3B3Q15393 1217 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 DEFB115Q30KQ5 88 aa14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 CIAPIN1Q6FI81 312 aa14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 PHAXQ9H814 394 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 ADARB2Q9NS39 739 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 ABT1Q9ULW3 272 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-213ENST00000557455 DUOX1Q9NRD9 1551 aa14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 RASSF10A6NK89 507 aa14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 IRS4O14654 1257 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 GMPSP49915 693 aaPredicted RBP14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 TNIP1Q15025 636 aa14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 CELF1Q92879 486 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 BCL2L13Q9BXK5 485 aa14.32□□□□□ -0.12
CCDC88C-213ENST00000557455 RAD17O75943 681 aa14.31□□□□□ -0.12
CCDC88C-213ENST00000557455 WASHC4Q2M389 1173 aa14.31□□□□□ -0.12
CCDC88C-213ENST00000557455 AIDAQ96BJ3 306 aa14.31□□□□□ -0.12
CCDC88C-213ENST00000557455 MYD88Q99836 296 aa14.31□□□□□ -0.12
CCDC88C-213ENST00000557455 CHMP4AQ9BY43 222 aa14.31□□□□□ -0.12
CCDC88C-213ENST00000557455 NSFL1CQ9UNZ2 370 aaKnown RBP14.31□□□□□ -0.12
CCDC88C-213ENST00000557455 HSP90B1P14625 803 aaKnown RBP14.3□□□□□ -0.12
CCDC88C-213ENST00000557455 FMR1Q06787 632 aaKnown RBP eCLIP14.3□□□□□ -0.12
CCDC88C-213ENST00000557455 ZBTB38Q8NAP3 1195 aaPredicted RBP14.3□□□□□ -0.12
CCDC88C-213ENST00000557455 C8orf58Q8NAV2 365 aa14.3□□□□□ -0.12
CCDC88C-213ENST00000557455 CDHR2Q9BYE9 1310 aa14.3□□□□□ -0.12
CCDC88C-213ENST00000557455 COL4A1P02462 1669 aa14.3□□□□□ -0.12
CCDC88C-213ENST00000557455 YDJCA8MPS7 323 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 C6orf229H3BNL8 230 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 RIMBP2O15034 1052 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 FOXN1O15353 648 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 CAPN15O75808 1086 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 DDX58O95786 925 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 RPS8P62241 208 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 CCDC30Q5VVM6 783 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 CCDC191Q8NCU4 936 aa14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 WDR33Q9C0J8 1336 aaKnown RBP14.29□□□□□ -0.12
CCDC88C-213ENST00000557455 TRAF5O00463 557 aa14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 CTCFP49711 727 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 GPSM2P81274 684 aa14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 EYA3Q99504 573 aa14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 CWC25Q9NXE8 425 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 POLLQ9UGP5 575 aa14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 CNOT7Q9UIV1 285 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-213ENST00000557455 H7C1D1 291 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 PCCAP05165 728 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 CCDC152Q4G0S7 254 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 CCDC184Q52MB2 194 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 CST9Q5W186 159 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 PAXIP1Q6ZW49 1069 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 TSPYL6Q8N831 410 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 METTL22Q9BUU2 404 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 DBNDD1Q9H9R9 158 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 SEC31BQ9NQW1 1179 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 WBP1LQ9NX94 342 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 MYH3P11055 1940 aa14.27□□□□□ -0.13
CCDC88C-213ENST00000557455 PSMD14O00487 310 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 PDE8AO60658 829 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 ECE1P42892 770 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 HIRAP54198 1017 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 MAP2K1Q02750 393 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 MICALL2Q8IY33 904 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 TBC1D16Q8TBP0 767 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 ZC3H15Q8WU90 426 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 JARID2Q92833 1246 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 TSR2Q969E8 191 aaKnown RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 GLIS2Q9BZE0 524 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 PRDM10Q9NQV6 1147 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 PGAP2Q9UHJ9 254 aa14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 ZBTB12Q9Y330 459 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-213ENST00000557455 POLR2AP24928 1970 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 SHTN1A0MZ66 631 aa14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 ECE2O60344 883 aa14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 CELF2O95319 508 aaKnown RBP14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 GRM1Q13255 1194 aa14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 DOK7Q18PE1 504 aa14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 CCDC27Q2M243 656 aa14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 TRPM4Q8TD43 1214 aa14.25□□□□□ -0.13
CCDC88C-213ENST00000557455 DPF2Q92785 391 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms