RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 FKBP4Q02790 459 aaKnown RBP eCLIP15.86■□□□□ 0.13
SLIRP-209ENST00000557342 GRAPQ13588 217 aa15.86■□□□□ 0.13
SLIRP-209ENST00000557342 GRAPLQ8TC17 118 aaPredicted RBP15.86■□□□□ 0.13
SLIRP-209ENST00000557342 SMC4Q9NTJ3 1288 aa15.86■□□□□ 0.13
SLIRP-209ENST00000557342 H7C1W4 665 aa15.85■□□□□ 0.13
SLIRP-209ENST00000557342 CCDC152Q4G0S7 254 aa15.85■□□□□ 0.13
SLIRP-209ENST00000557342 BEND3Q5T5X7 828 aa15.85■□□□□ 0.13
SLIRP-209ENST00000557342 JARID2Q92833 1246 aaPredicted RBP15.85■□□□□ 0.13
SLIRP-209ENST00000557342 ATP6V0A2Q9Y487 856 aa15.85■□□□□ 0.13
SLIRP-209ENST00000557342 LRRC37AA6NMS7 1700 aa15.85■□□□□ 0.13
SLIRP-209ENST00000557342 ALDH1L1O75891 902 aa15.84■□□□□ 0.13
SLIRP-209ENST00000557342 SLC4A10Q6U841 1118 aa15.84■□□□□ 0.13
SLIRP-209ENST00000557342 UBE3BQ7Z3V4 1068 aa15.84■□□□□ 0.13
SLIRP-209ENST00000557342 SP8Q8IXZ3 490 aa15.84■□□□□ 0.13
SLIRP-209ENST00000557342 PSMD1Q99460 953 aa15.84■□□□□ 0.13
SLIRP-209ENST00000557342 PRELPP51888 382 aa15.83■□□□□ 0.12
SLIRP-209ENST00000557342 BRPF1P55201 1214 aaPredicted RBP15.83■□□□□ 0.12
SLIRP-209ENST00000557342 OLFM4Q6UX06 510 aa15.83■□□□□ 0.12
SLIRP-209ENST00000557342 BCL2L13Q9BXK5 485 aa15.83■□□□□ 0.12
SLIRP-209ENST00000557342 SRCIN1Q9C0H9 1055 aa15.83■□□□□ 0.12
SLIRP-209ENST00000557342 GPBP1L1Q9HC44 474 aaPredicted RBP15.83■□□□□ 0.12
SLIRP-209ENST00000557342 SNED1Q8TER0 1413 aa15.83■□□□□ 0.12
SLIRP-209ENST00000557342 CTSWP56202 376 aa15.82■□□□□ 0.12
SLIRP-209ENST00000557342 PLA2G12BQ9BX93 195 aa15.82■□□□□ 0.12
SLIRP-209ENST00000557342 SPEF2Q9C093 1822 aa15.82■□□□□ 0.12
SLIRP-209ENST00000557342 RARSP54136 660 aaKnown RBP15.81■□□□□ 0.12
SLIRP-209ENST00000557342 CASP7P55210 303 aa15.81■□□□□ 0.12
SLIRP-209ENST00000557342 RPS8P62241 208 aaKnown RBP15.81■□□□□ 0.12
SLIRP-209ENST00000557342 SUPT20HQ8NEM7 779 aa15.81■□□□□ 0.12
SLIRP-209ENST00000557342 KDM2BQ8NHM5 1336 aa15.81■□□□□ 0.12
SLIRP-209ENST00000557342 ZNF526Q8TF50 670 aaPredicted RBP15.81■□□□□ 0.12
SLIRP-209ENST00000557342 CELF1Q92879 486 aaKnown RBP15.81■□□□□ 0.12
SLIRP-209ENST00000557342 C9orf78Q9NZ63 289 aaPredicted RBP15.81■□□□□ 0.12
SLIRP-209ENST00000557342 RTL9Q8NET4 1388 aa15.8■□□□□ 0.12
SLIRP-209ENST00000557342 KIF16BQ96L93 1317 aa15.8■□□□□ 0.12
SLIRP-209ENST00000557342 GRM8O00222 908 aa15.8■□□□□ 0.12
SLIRP-209ENST00000557342 IARSP41252 1262 aaKnown RBP15.8■□□□□ 0.12
SLIRP-209ENST00000557342 MPNDQ8N594 471 aa15.8■□□□□ 0.12
SLIRP-209ENST00000557342 TTLL11Q8NHH1 800 aa15.8■□□□□ 0.12
SLIRP-209ENST00000557342 CDC5LQ99459 802 aaKnown RBP15.8■□□□□ 0.12
SLIRP-209ENST00000557342 VPS33BQ9H267 617 aa15.8■□□□□ 0.12
SLIRP-209ENST00000557342 ZNF277Q9NRM2 450 aaPredicted RBP15.8■□□□□ 0.12
SLIRP-209ENST00000557342 DPY19L2Q6NUT2 758 aa15.79■□□□□ 0.12
SLIRP-209ENST00000557342 DPP8Q6V1X1 898 aaPredicted RBP15.79■□□□□ 0.12
SLIRP-209ENST00000557342 ANKRD18AQ8IVF6 992 aa15.79■□□□□ 0.12
SLIRP-209ENST00000557342 CCDC85AQ96PX6 553 aaPredicted RBP15.79■□□□□ 0.12
SLIRP-209ENST00000557342 API5Q9BZZ5 524 aaKnown RBP15.79■□□□□ 0.12
SLIRP-209ENST00000557342 SEC31BQ9NQW1 1179 aa15.79■□□□□ 0.12
SLIRP-209ENST00000557342 RTFDC1Q9BY42 306 aaPredicted RBP15.78■□□□□ 0.12
SLIRP-209ENST00000557342 NOB1Q9ULX3 412 aaKnown RBP15.78■□□□□ 0.12
SLIRP-209ENST00000557342 COL4A1P02462 1669 aa15.78■□□□□ 0.12
SLIRP-209ENST00000557342 GLTPD2A6NH11 291 aa15.77■□□□□ 0.12
SLIRP-209ENST00000557342 CSF1RP07333 972 aa15.77■□□□□ 0.12
SLIRP-209ENST00000557342 JDP2Q8WYK2 163 aa15.77■□□□□ 0.12
SLIRP-209ENST00000557342 ARHGAP45Q92619 1136 aa15.77■□□□□ 0.12
SLIRP-209ENST00000557342 GREM2Q9H772 168 aa15.77■□□□□ 0.12
SLIRP-209ENST00000557342 LTBP1Q14766 1721 aa15.77■□□□□ 0.11
SLIRP-209ENST00000557342 UTYO14607 1347 aa15.76■□□□□ 0.11
SLIRP-209ENST00000557342 IPO8O15397 1037 aaKnown RBP15.76■□□□□ 0.11
SLIRP-209ENST00000557342 CCT4P50991 539 aaKnown RBP15.76■□□□□ 0.11
SLIRP-209ENST00000557342 NSFL1CQ9UNZ2 370 aaKnown RBP15.76■□□□□ 0.11
SLIRP-209ENST00000557342 WDR90Q96KV7 1748 aa15.76■□□□□ 0.11
SLIRP-209ENST00000557342 PPIP5K2O43314 1243 aa15.75■□□□□ 0.11
SLIRP-209ENST00000557342 IGHMBP2P38935 993 aaKnown RBP15.75■□□□□ 0.11
SLIRP-209ENST00000557342 FOXO4P98177 505 aa15.75■□□□□ 0.11
SLIRP-209ENST00000557342 SLC51AQ86UW1 340 aa15.75■□□□□ 0.11
SLIRP-209ENST00000557342 LARGE2Q8N3Y3 721 aa15.75■□□□□ 0.11
SLIRP-209ENST00000557342 DUOX1Q9NRD9 1551 aa15.75■□□□□ 0.11
SLIRP-209ENST00000557342 SCN4AP35499 1836 aa15.74■□□□□ 0.11
SLIRP-209ENST00000557342 ANKRD18BA2A2Z9 1011 aa15.74■□□□□ 0.11
SLIRP-209ENST00000557342 ITGA6P23229 1130 aa15.74■□□□□ 0.11
SLIRP-209ENST00000557342 FAM161AQ3B820 660 aa15.74■□□□□ 0.11
SLIRP-209ENST00000557342 NIM1KQ8IY84 436 aa15.74■□□□□ 0.11
SLIRP-209ENST00000557342 BSDC1Q9NW68 430 aaPredicted RBP15.74■□□□□ 0.11
SLIRP-209ENST00000557342 FZD9O00144 591 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 NBPF7P0C2Y1 421 aaPredicted RBP15.73■□□□□ 0.11
SLIRP-209ENST00000557342 EIF6P56537 245 aaKnown RBP15.73■□□□□ 0.11
SLIRP-209ENST00000557342 GPSM2P81274 684 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 KIAA2012Q0VF49 1180 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 IFIT5Q13325 482 aaKnown RBP15.73■□□□□ 0.11
SLIRP-209ENST00000557342 AOC3Q16853 763 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 EYA3Q99504 573 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 MPHOSPH8Q99549 860 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 NMRK2Q9NPI5 230 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 PODXL2Q9NZ53 605 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 ANKIB1Q9P2G1 1089 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 CHMP3Q9Y3E7 222 aa15.73■□□□□ 0.11
SLIRP-209ENST00000557342 C6orf229H3BNL8 230 aa15.72■□□□□ 0.11
SLIRP-209ENST00000557342 KIF3CO14782 793 aa15.72■□□□□ 0.11
SLIRP-209ENST00000557342 BCAR3O75815 825 aa15.72■□□□□ 0.11
SLIRP-209ENST00000557342 LMBR1LQ6UX01 489 aa15.72■□□□□ 0.11
SLIRP-209ENST00000557342 RRAGCQ9HB90 399 aa15.72■□□□□ 0.11
SLIRP-209ENST00000557342 HDAC5Q9UQL6 1122 aa15.72■□□□□ 0.11
SLIRP-209ENST00000557342 XDHP47989 1333 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 COL4A5P29400 1685 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 VEGFAP15692 232 aaPredicted RBP15.71■□□□□ 0.11
SLIRP-209ENST00000557342 WASHC4Q2M389 1173 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 CCDC57Q2TAC2 916 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 ATF7IPQ6VMQ6 1270 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 C16orf71Q8IYS4 520 aaPredicted RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms