RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 MKRN1Q9UHC7 482 aaKnown RBP29.24■■■□□ 2.27
ACTN1-220ENST00000556433 MAP1SQ66K74 1059 aaPredicted RBP29.23■■■□□ 2.27
ACTN1-220ENST00000556433 CNTROBQ8N137 903 aa29.23■■■□□ 2.27
ACTN1-220ENST00000556433 EPS15P42566 896 aa29.22■■■□□ 2.27
ACTN1-220ENST00000556433 SF3B3Q15393 1217 aaKnown RBP29.22■■■□□ 2.27
ACTN1-220ENST00000556433 ZNRF3Q9ULT6 936 aa29.22■■■□□ 2.27
ACTN1-220ENST00000556433 ZEB1P37275 1124 aaPredicted RBP29.21■■■□□ 2.27
ACTN1-220ENST00000556433 SCNN1DP51172 638 aa29.21■■■□□ 2.27
ACTN1-220ENST00000556433 TMC4Q7Z404 712 aa29.21■■■□□ 2.27
ACTN1-220ENST00000556433 LAMB2P55268 1798 aa29.21■■■□□ 2.27
ACTN1-220ENST00000556433 IRS4O14654 1257 aaPredicted RBP29.2■■■□□ 2.26
ACTN1-220ENST00000556433 CHMP4AQ9BY43 222 aa29.2■■■□□ 2.26
ACTN1-220ENST00000556433 TMEM88BA6NKF7 163 aa29.19■■■□□ 2.26
ACTN1-220ENST00000556433 CXCL9Q07325 125 aa29.19■■■□□ 2.26
ACTN1-220ENST00000556433 KIAA2012Q0VF49 1180 aa29.19■■■□□ 2.26
ACTN1-220ENST00000556433 CCDC30Q5VVM6 783 aa29.19■■■□□ 2.26
ACTN1-220ENST00000556433 HSPA1AP0DMV8 641 aaKnown RBP29.18■■■□□ 2.26
ACTN1-220ENST00000556433 HSPA1BP0DMV9 641 aaKnown RBP29.18■■■□□ 2.26
ACTN1-220ENST00000556433 CELF1Q92879 486 aaKnown RBP29.18■■■□□ 2.26
ACTN1-220ENST00000556433 MYD88Q99836 296 aa29.18■■■□□ 2.26
ACTN1-220ENST00000556433 ZBTB38Q8NAP3 1195 aaPredicted RBP29.17■■■□□ 2.26
ACTN1-220ENST00000556433 TSPYL6Q8N831 410 aa29.16■■■□□ 2.26
ACTN1-220ENST00000556433 COL13A1Q5TAT6 717 aaPredicted RBP29.15■■■□□ 2.26
ACTN1-220ENST00000556433 USP50Q70EL3 339 aaPredicted RBP29.15■■■□□ 2.26
ACTN1-220ENST00000556433 NSFL1CQ9UNZ2 370 aaKnown RBP29.15■■■□□ 2.26
ACTN1-220ENST00000556433 ADAMTSL1Q8N6G6 1762 aa29.15■■■□□ 2.26
ACTN1-220ENST00000556433 TAF1P21675 1872 aa29.14■■■□□ 2.26
ACTN1-220ENST00000556433 DDX58O95786 925 aaKnown RBP29.14■■■□□ 2.26
ACTN1-220ENST00000556433 CCDC27Q2M243 656 aa29.14■■■□□ 2.26
ACTN1-220ENST00000556433 CIAPIN1Q6FI81 312 aa29.14■■■□□ 2.26
ACTN1-220ENST00000556433 CCDC191Q8NCU4 936 aa29.14■■■□□ 2.26
ACTN1-220ENST00000556433 TSR2Q969E8 191 aaKnown RBP29.14■■■□□ 2.26
ACTN1-220ENST00000556433 GPRC5DQ9NZD1 345 aa29.14■■■□□ 2.26
ACTN1-220ENST00000556433 CNTNAP1P78357 1384 aa29.13■■■□□ 2.25
ACTN1-220ENST00000556433 HSP90B1P14625 803 aaKnown RBP29.13■■■□□ 2.25
ACTN1-220ENST00000556433 WWC1Q8IX03 1113 aa29.13■■■□□ 2.25
ACTN1-220ENST00000556433 LTBP1Q14766 1721 aa29.13■■■□□ 2.25
ACTN1-220ENST00000556433 DDX60Q8IY21 1712 aaKnown RBP29.12■■■□□ 2.25
ACTN1-220ENST00000556433 RAD17O75943 681 aa29.12■■■□□ 2.25
ACTN1-220ENST00000556433 GMPSP49915 693 aaPredicted RBP29.12■■■□□ 2.25
ACTN1-220ENST00000556433 RPS8P62241 208 aaKnown RBP29.12■■■□□ 2.25
ACTN1-220ENST00000556433 TNIP1Q15025 636 aa29.12■■■□□ 2.25
ACTN1-220ENST00000556433 METTL22Q9BUU2 404 aaPredicted RBP29.12■■■□□ 2.25
ACTN1-220ENST00000556433 ADARB2Q9NS39 739 aaKnown RBP29.12■■■□□ 2.25
ACTN1-220ENST00000556433 MRS2Q9HD23 443 aa29.11■■■□□ 2.25
ACTN1-220ENST00000556433 CWC25Q9NXE8 425 aaPredicted RBP29.11■■■□□ 2.25
ACTN1-220ENST00000556433 C6orf229H3BNL8 230 aa29.1■■■□□ 2.25
ACTN1-220ENST00000556433 GPSM2P81274 684 aa29.1■■■□□ 2.25
ACTN1-220ENST00000556433 WASHC4Q2M389 1173 aa29.1■■■□□ 2.25
ACTN1-220ENST00000556433 JARID2Q92833 1246 aaPredicted RBP29.1■■■□□ 2.25
ACTN1-220ENST00000556433 BCL2L13Q9BXK5 485 aa29.1■■■□□ 2.25
ACTN1-220ENST00000556433 ZNF316A6NFI3 1004 aaPredicted RBP29.09■■■□□ 2.25
ACTN1-220ENST00000556433 ANP32CO43423 234 aa29.09■■■□□ 2.25
ACTN1-220ENST00000556433 PCCAP05165 728 aaPredicted RBP29.09■■■□□ 2.25
ACTN1-220ENST00000556433 MAP3K2Q9Y2U5 619 aa29.09■■■□□ 2.25
ACTN1-220ENST00000556433 YDJCA8MPS7 323 aa29.08■■■□□ 2.25
ACTN1-220ENST00000556433 RIMBP2O15034 1052 aa29.08■■■□□ 2.25
ACTN1-220ENST00000556433 VEGFBP49765 207 aa29.08■■■□□ 2.25
ACTN1-220ENST00000556433 STK31Q9BXU1 1019 aa29.08■■■□□ 2.25
ACTN1-220ENST00000556433 SEC31BQ9NQW1 1179 aa29.08■■■□□ 2.25
ACTN1-220ENST00000556433 POLLQ9UGP5 575 aa29.08■■■□□ 2.25
ACTN1-220ENST00000556433 PDE8AO60658 829 aa29.07■■■□□ 2.24
ACTN1-220ENST00000556433 DEFB115Q30KQ5 88 aa29.07■■■□□ 2.24
ACTN1-220ENST00000556433 KSR2Q6VAB6 950 aa29.07■■■□□ 2.24
ACTN1-220ENST00000556433 PCNTO95613 3336 aa29.06■■■□□ 2.24
ACTN1-220ENST00000556433 PI4KAP2A4QPH2 592 aa29.06■■■□□ 2.24
ACTN1-220ENST00000556433 FMR1Q06787 632 aaKnown RBP eCLIP29.06■■■□□ 2.245e-6■■■■□ 22.9
ACTN1-220ENST00000556433 TWISTNBQ3B726 338 aaPredicted RBP29.06■■■□□ 2.24
ACTN1-220ENST00000556433 CCDC152Q4G0S7 254 aa29.06■■■□□ 2.24
ACTN1-220ENST00000556433 PI4KAP1Q8N8J0 262 aa29.06■■■□□ 2.24
ACTN1-220ENST00000556433 ABT1Q9ULW3 272 aaKnown RBP29.06■■■□□ 2.24
ACTN1-220ENST00000556433 EYA3Q99504 573 aa29.05■■■□□ 2.24
ACTN1-220ENST00000556433 DBNDD1Q9H9R9 158 aa29.05■■■□□ 2.24
ACTN1-220ENST00000556433 DUOX1Q9NRD9 1551 aa29.05■■■□□ 2.24
ACTN1-220ENST00000556433 IL16Q14005 1332 aa29.04■■■□□ 2.24
ACTN1-220ENST00000556433 CDHR2Q9BYE9 1310 aa29.04■■■□□ 2.24
ACTN1-220ENST00000556433 NCBP3Q53F19 620 aaKnown RBP29.04■■■□□ 2.24
ACTN1-220ENST00000556433 TBC1D16Q8TBP0 767 aa29.04■■■□□ 2.24
ACTN1-220ENST00000556433 CCDC85AQ96PX6 553 aaPredicted RBP29.04■■■□□ 2.24
ACTN1-220ENST00000556433 CNOT7Q9UIV1 285 aaKnown RBP29.04■■■□□ 2.24
ACTN1-220ENST00000556433 RASSF10A6NK89 507 aa29.03■■■□□ 2.24
ACTN1-220ENST00000556433 TRAF5O00463 557 aa29.03■■■□□ 2.24
ACTN1-220ENST00000556433 LRRC37AA6NMS7 1700 aa29.03■■■□□ 2.24
ACTN1-220ENST00000556433 COL4A1P02462 1669 aa29.02■■■□□ 2.24
ACTN1-220ENST00000556433 SLC4A2P04920 1241 aa29.02■■■□□ 2.24
ACTN1-220ENST00000556433 DOK7Q18PE1 504 aa29.02■■■□□ 2.24
ACTN1-220ENST00000556433 GPR101Q96P66 508 aaPredicted RBP29.02■■■□□ 2.24
ACTN1-220ENST00000556433 SALL2Q9Y467 1007 aaPredicted RBP29.02■■■□□ 2.24
ACTN1-220ENST00000556433 H7C1D1 291 aa29.01■■■□□ 2.23
ACTN1-220ENST00000556433 IGKV5-2P06315 115 aa29.01■■■□□ 2.23
ACTN1-220ENST00000556433 NEXNQ0ZGT2 675 aa29.01■■■□□ 2.23
ACTN1-220ENST00000556433 G2E3Q7L622 706 aa29.01■■■□□ 2.23
ACTN1-220ENST00000556433 TNS4Q8IZW8 715 aa29.01■■■□□ 2.23
ACTN1-220ENST00000556433 ZC3H12CQ9C0D7 883 aaKnown RBP29.01■■■□□ 2.23
ACTN1-220ENST00000556433 ZBTB12Q9Y330 459 aaPredicted RBP29.01■■■□□ 2.23
ACTN1-220ENST00000556433 PSMD14O00487 310 aa29■■■□□ 2.23
ACTN1-220ENST00000556433 HIRAP54198 1017 aaPredicted RBP29■■■□□ 2.23
ACTN1-220ENST00000556433 PODXL2Q9NZ53 605 aa29■■■□□ 2.23
ACTN1-220ENST00000556433 ANKIB1Q9P2G1 1089 aa29■■■□□ 2.23
ACTN1-220ENST00000556433 SHTN1A0MZ66 631 aa28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms