RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 BTBD11A6QL63 1104 aa8.3□□□□□ -1.08
SCFD1-218ENST00000556256 EPB42P16452 691 aa8.3□□□□□ -1.08
SCFD1-218ENST00000556256 MCTP1Q6DN14 999 aa8.3□□□□□ -1.08
SCFD1-218ENST00000556256 IFT43Q96FT9 208 aa8.3□□□□□ -1.08
SCFD1-218ENST00000556256 KLK14Q9P0G3 267 aa8.3□□□□□ -1.08
SCFD1-218ENST00000556256 DLL1O00548 723 aa8.29□□□□□ -1.08
SCFD1-218ENST00000556256 LGR5O75473 907 aa8.29□□□□□ -1.08
SCFD1-218ENST00000556256 SASH3O75995 380 aa8.29□□□□□ -1.08
SCFD1-218ENST00000556256 IDH3AP50213 366 aa8.29□□□□□ -1.08
SCFD1-218ENST00000556256 DZIP1LQ8IYY4 767 aaKnown RBP8.29□□□□□ -1.08
SCFD1-218ENST00000556256 HINFPQ9BQA5 517 aa8.29□□□□□ -1.08
SCFD1-218ENST00000556256 GPLD1P80108 840 aa8.28□□□□□ -1.08
SCFD1-218ENST00000556256 SMG9Q9H0W8 520 aaKnown RBP8.28□□□□□ -1.08
SCFD1-218ENST00000556256 AKTIPQ9H8T0 292 aa8.28□□□□□ -1.08
SCFD1-218ENST00000556256 PCMTD2Q9NV79 361 aa8.28□□□□□ -1.08
SCFD1-218ENST00000556256 SLC24A1O60721 1099 aa8.27□□□□□ -1.09
SCFD1-218ENST00000556256 ALX3O95076 343 aa8.27□□□□□ -1.09
SCFD1-218ENST00000556256 RARAP10276 462 aa8.27□□□□□ -1.09
SCFD1-218ENST00000556256 HFE2Q6ZVN8 426 aa8.27□□□□□ -1.09
SCFD1-218ENST00000556256 SLC51AQ86UW1 340 aa8.27□□□□□ -1.09
SCFD1-218ENST00000556256 C11orf16Q9NQ32 467 aa8.27□□□□□ -1.09
SCFD1-218ENST00000556256 TFIP11Q9UBB9 837 aaKnown RBP8.27□□□□□ -1.09
SCFD1-218ENST00000556256 FSTP19883 344 aa8.26□□□□□ -1.09
SCFD1-218ENST00000556256 TMEM130Q8N3G9 435 aa8.26□□□□□ -1.09
SCFD1-218ENST00000556256 COL17A1Q9UMD9 1497 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-218ENST00000556256 MICAL2O94851 1124 aa8.25□□□□□ -1.09
SCFD1-218ENST00000556256 UBTFP17480 764 aaKnown RBP8.25□□□□□ -1.09
SCFD1-218ENST00000556256 IGFBP4P22692 258 aa8.25□□□□□ -1.09
SCFD1-218ENST00000556256 SSTR4P31391 388 aa8.25□□□□□ -1.09
SCFD1-218ENST00000556256 ARSDP51689 593 aa8.25□□□□□ -1.09
SCFD1-218ENST00000556256 NRLP54845 237 aa8.24□□□□□ -1.09
SCFD1-218ENST00000556256 DGKZQ13574 1117 aa8.24□□□□□ -1.09
SCFD1-218ENST00000556256 LARP1Q6PKG0 1096 aaKnown RBP8.24□□□□□ -1.09
SCFD1-218ENST00000556256 F8W735 103 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-218ENST00000556256 EIF2AK2P19525 551 aaKnown RBP8.23□□□□□ -1.09
SCFD1-218ENST00000556256 DPYDQ12882 1025 aa8.23□□□□□ -1.09
SCFD1-218ENST00000556256 CRTC2Q53ET0 693 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-218ENST00000556256 MRPL18Q9H0U6 180 aaKnown RBP8.23□□□□□ -1.09
SCFD1-218ENST00000556256 TLR7Q9NYK1 1049 aaKnown RBP8.23□□□□□ -1.09
SCFD1-218ENST00000556256 MAFBQ9Y5Q3 323 aaPredicted RBP8.23□□□□□ -1.09
SCFD1-218ENST00000556256 J3QW42 95 aa8.22□□□□□ -1.09
SCFD1-218ENST00000556256 OPLAHO14841 1288 aa8.22□□□□□ -1.09
SCFD1-218ENST00000556256 ARID4AP29374 1257 aaPredicted RBP8.22□□□□□ -1.09
SCFD1-218ENST00000556256 CD97P48960 835 aa8.22□□□□□ -1.09
SCFD1-218ENST00000556256 PTK7Q13308 1070 aa8.22□□□□□ -1.09
SCFD1-218ENST00000556256 PLD4Q96BZ4 506 aa8.22□□□□□ -1.09
SCFD1-218ENST00000556256 QTRT2Q9H974 415 aaKnown RBP8.22□□□□□ -1.09
SCFD1-218ENST00000556256 USP20Q9Y2K6 914 aa8.22□□□□□ -1.09
SCFD1-218ENST00000556256 KRTAP4-8A0A0G2JLE6 195 aa8.21□□□□□ -1.1
SCFD1-218ENST00000556256 GDF6Q6KF10 455 aaPredicted RBP8.21□□□□□ -1.1
SCFD1-218ENST00000556256 IL22RA1Q8N6P7 574 aa8.21□□□□□ -1.1
SCFD1-218ENST00000556256 RTCBQ9Y3I0 505 aaKnown RBP8.21□□□□□ -1.1
SCFD1-218ENST00000556256 LOC102724428A0A0B4J2F2 783 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 PAX4O43316 350 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 MED26O95402 600 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 EGFRP00533 1210 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 SIK1P57059 783 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 FLIIQ13045 1269 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 SETDB1Q15047 1291 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 C11orf91Q3C1V1 193 aa8.2□□□□□ -1.1
SCFD1-218ENST00000556256 KANK4Q5T7N3 995 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-218ENST00000556256 Q6ZS46 218 aa8.19□□□□□ -1.1
SCFD1-218ENST00000556256 XYLBO75191 536 aa8.18□□□□□ -1.1
SCFD1-218ENST00000556256 WEE1P30291 646 aa8.18□□□□□ -1.1
SCFD1-218ENST00000556256 ANKMY2Q8IV38 441 aa8.18□□□□□ -1.1
SCFD1-218ENST00000556256 AGGF1Q8N302 714 aaeCLIP8.18□□□□□ -1.1
SCFD1-218ENST00000556256 GLMNQ92990 594 aa8.18□□□□□ -1.1
SCFD1-218ENST00000556256 MYO19Q96H55 970 aa8.18□□□□□ -1.1
SCFD1-218ENST00000556256 MMP20O60882 483 aa8.17□□□□□ -1.1
SCFD1-218ENST00000556256 PSAPP07602 524 aa8.17□□□□□ -1.1
SCFD1-218ENST00000556256 TXKP42681 527 aa8.17□□□□□ -1.1
SCFD1-218ENST00000556256 CMTR1Q8N1G2 835 aaKnown RBP8.17□□□□□ -1.1
SCFD1-218ENST00000556256 FMNL2Q96PY5 1086 aa8.17□□□□□ -1.1
SCFD1-218ENST00000556256 SRA1Q9HD15 236 aaKnown RBP8.17□□□□□ -1.1
SCFD1-218ENST00000556256 RAXQ9Y2V3 346 aa8.17□□□□□ -1.1
SCFD1-218ENST00000556256 GLB1P16278 677 aa8.16□□□□□ -1.1
SCFD1-218ENST00000556256 IRAK1P51617 712 aa8.16□□□□□ -1.1
SCFD1-218ENST00000556256 MAP4K3Q8IVH8 894 aa8.16□□□□□ -1.1
SCFD1-218ENST00000556256 RGL4Q8IZJ4 473 aa8.16□□□□□ -1.1
SCFD1-218ENST00000556256 NSUN5Q96P11 429 aaKnown RBP8.16□□□□□ -1.1
SCFD1-218ENST00000556256 UBL7Q96S82 380 aaPredicted RBP8.16□□□□□ -1.1
SCFD1-218ENST00000556256 LRFN2Q9ULH4 789 aa8.16□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L15C9J2P7 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L10C9JJH3 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L13C9JLJ4 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L12C9JPN9 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L11C9JVI0 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L21D6R901 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L18D6R9N7 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L22D6RA61 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L17D6RBQ6 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L19D6RCP7 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L20D6RJB6 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 FOXO3O43524 673 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 PTCD1O75127 700 aaKnown RBP8.15□□□□□ -1.1
SCFD1-218ENST00000556256 GHRHP01286 108 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 IGLV1-40P01703 118 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 USP17L24Q0WX57 530 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 VTI1AQ96AJ9 217 aa8.15□□□□□ -1.1
SCFD1-218ENST00000556256 STOML1Q9UBI4 398 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms